HsaINT0044492 @ hg38
Intron Retention
Gene
ENSG00000171954 | CYP4F22
Description
cytochrome P450 family 4 subfamily F member 22 [Source:HGNC Symbol;Acc:HGNC:26820]
Coordinates
chr19:15550674-15552316:+
Coord C1 exon
chr19:15550674-15550756
Coord A exon
chr19:15550757-15551293
Coord C2 exon
chr19:15551294-15552316
Length
537 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
CCTGTCCCCTCTTCCTCCAGGAA
3' ss Score
13.55
Exon sequences
Seq C1 exon
GTGTACAACCCCTACCGCTTTGACCCGGACAACCCACAGCAGCGCTCTCCACTGGCCTATGTGCCCTTCTCTGCAGGACCCAG
Seq A exon
GTAACCCCTCTATTTCCCCTAGTCCAAGCCAGCTGTGTAGGAACAGAGGCAGGGAAAGATCAGGAATGTGCCTCTCAGGAGCAGAGATCAGATGGCACCCAGGCGTCCTTTCTGAAGACCCAGCACCCTCTCCCCAATGCGCCAGGAGGCCCCCAAATCAGACTCTGCAATAGCATCCTGGGTATTGAGCACCAACGGTGTGTCAGGCCCTGAGTTCTGGGCTCCCACGCTCCCATTGGCTCTATGATGCCTTTGTCCCCGTTTTTACAGATGAAGGAACTGAGACTCAGAGGGGGCGCTGTGTATCCAGGACACACAGCTAGTAAGAGGCTGTACTGGGATTCAGACACTCAACCCCAAGGTCACATTAATTGAGCGATCCGTGGGGTCTCACTTTAACCCTCACCCAGCGTGGGGTTTCACTTTAACCCTCAGCCAGCCCAGGATGCTTGCTTCATTTTCAAAGGAGGCATGTGACCCCCGGGGACCAGTGCTCACACAGAAGCTGGGCCTGAGCCCTGTCCCCTCTTCCTCCAG
Seq C2 exon
GAATTGCATCGGACAGAGCTTCGCCATGGCCGAGTTGCGCGTGGTTGTGGCACTAACACTGCTACGTTTCCGCCTGAGCGTGGACCGAACGCGCAAGGTGCGGCGGAAGCCGGAGCTCATACTGCGCACGGAGAACGGGCTCTGGCTCAAGGTGGAGCCGCTGCCTCCGCGGGCCTGAGCGTGGGCGCGCCCCTGCGGCTCCCGAGGGTCCAGGCCCCGCCCCCAAAGGACCAGGACTCGCCCCAAAGATCCCGAGGGCATAGGCCACCCCCCTCGAAGTTCAGGTTCAGCTCCTGGATGACCAGGCACCGCTGTTGAGCAGCCTGGTGGTACTGGCCACGCCCCTCAAGGCAAGGCTCCTCCCCTTAGGGGGCCTGATCCCGCCCCTTGAGGCTTAGGTCCCGCCCCCTGACTTCTCGCACCTGTCCTGTTTGAGGGACCAGGGTCGACCCTGCCCCCTTGGGCTCAGGCCCCGCCCCCAGGATCCTACGGATTGAGGTCCTCAGGCCACGCCCCTGCAGATCCAGGTCTCCAGGCCTTGCCCACTGAGCCTTCAGAGGACCTAAGACCCACCTATGACTCAGGGCCCACCACACCCCACCCCCCCCCAACTGGCTGAACCCCTGGCAGGCTTCCAAACTGAGGAAAGCTGGAGCCTGACGTCAGAGCTTTTAACTCGGACATCACCCTCCTGAGGCCCTCAGCTCATACGGGCAGACTGCTCAGGCGTGAGGCTGGATCGTAGGGTTCGAGGCTGCTTGCTTTTGTTGTTGTTTTGTAAACTCAGACCCTTGTAAGCCCCTTCCTTCCTCCCTTGCCCAAAGATCCTTTGCTGAGTGTTCTGTTTTTGCAGAATAAAAGCAAAGGATGCAGACTTACCCCACCCTCCACCCCTAGCTCAGCCAGATCCTTACACGTGGAGCCCCCAGCATGGGAATGAGGGGCTCTGCAACTGAGCGAAGCTGCGGGCTAGGAGGCTGGAAAGCCATTTATCCTAGGACATAAACTCAGATTTTGGGGGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171954:ENST00000601005:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(5.8=100)
A:
NA
C2:
PF0006717=p450=PD(11.0=85.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGACCCGGACAACCCAC
R:
GCTGAACCTGAACTTCGAGGG
Band lengths:
357-894
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development