HsaINT0044492 @ hg19
Intron Retention
Gene
ENSG00000171954 | CYP4F22
Description
cytochrome P450, family 4, subfamily F, polypeptide 22 [Source:HGNC Symbol;Acc:26820]
Coordinates
chr19:15661485-15663128:+
Coord C1 exon
chr19:15661485-15661567
Coord A exon
chr19:15661568-15662104
Coord C2 exon
chr19:15662105-15663128
Length
537 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
CCTGTCCCCTCTTCCTCCAGGAA
3' ss Score
13.55
Exon sequences
Seq C1 exon
GTGTACAACCCCTACCGCTTTGACCCGGACAACCCACAGCAGCGCTCTCCACTGGCCTATGTGCCCTTCTCTGCAGGACCCAG
Seq A exon
GTAACCCCTCTATTTCCCCTAGTCCAAGCCAGCTGTGTAGGAACAGAGGCAGGGAAAGATCAGGAATGTGCCTCTCAGGAGCAGAGATCAGATGGCACCCAGGCGTCCTTTCTGAAGACCCAGCACCCTCTCCCCAATGCGCCAGGAGGCCCCCAAATCAGACTCTGCAATAGCATCCTGGGTATTGAGCACCAACGGTGTGTCAGGCCCTGAGTTCTGGGCTCCCACGCTCCCATTGGCTCTATGATGCCTTTGTCCCCGTTTTTACAGATGAAGGAACTGAGACTCAGAGGGGGCGCTGTGTATCCAGGACACACAGCTAGTAAGAGGCTGTACTGGGATTCAGACACTCAACCCCAAGGTCACATTAATTGAGCGATCCGTGGGGTCTCACTTTAACCCTCACCCAGCGTGGGGTTTCACTTTAACCCTCAGCCAGCCCAGGATGCTTGCTTCATTTTCAAAGGAGGCATGTGACCCCCGGGGACCAGTGCTCACACAGAAGCTGGGCCTGAGCCCTGTCCCCTCTTCCTCCAG
Seq C2 exon
GAATTGCATCGGACAGAGCTTCGCCATGGCCGAGTTGCGCGTGGTTGTGGCACTAACACTGCTACGTTTCCGCCTGAGCGTGGACCGAACGCGCAAGGTGCGGCGGAAGCCGGAGCTCATACTGCGCACGGAGAACGGGCTCTGGCTCAAGGTGGAGCCGCTGCCTCCGCGGGCCTGAGCGTGGGCGCGCCCCTGCGGCTCCCGAGGGTCCAGGCCCCGCCCCCAAAGGACCAGGACTCGCCCCAAAGATCCCGAGGGCATAGGCCACCCCCCTCGAAGTTCAGGTTCAGCTCCTGGATGACCAGGCACCGCTGTTGAGCAGCCTGGTGGTACTGGCCACGCCCCTCAAGGCAAGGCTCCTCCCCTTAGGGGGCCTGATCCCGCCCCTTGAGGCTTAGGTCCCGCCCCCTGACTTCTCGCACCTGTCCTGTTTGAGGGACCAGGGTCGACCCTGCCCCCTTGGGCTCAGGCCCCGCCCCCAGGATCCTACGGATTGAGGTCCTCAGGCCACGCCCCTGCAGATCCAGGTCTCCAGGCCTTGCCCACTGAGCCTTCAGAGGACCTAAGACCCACCTATGACTCAGGGCCCACCACACCCCACCCCCCCCCAACTGGCTGAACCCCTGGCAGGCTTCCAAACTGAGGAAAGCTGGAGCCTGACGTCAGAGCTTTTAACTCGGACATCACCCTCCTGAGGCCCTCAGCTCATACGGGCAGACTGCTCAGGCGTGAGGCTGGATCGTAGGGTTCGAGGCTGCTTGCTTTTGTTGTTGTTTTGTAAACTCAGACCCTTGTAAGCCCCTTCCTTCCTCCCTTGCCCAAAGATCCTTTGCTGAGTGTTCTGTTTTTGCAGAATAAAAGCAAAGGATGCAGACTTACCCCACCCTCCACCCCTAGCTCAGCCAGATCCTTACACGTGGAGCCCCCAGCATGGGAATGAGGGGCTCTGCAACTGAGCGAAGCTGCGGGCTAGGAGGCTGGAAAGCCATTTATCCTAGGACATAAACTCAGATTTTGGGGGTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171954-CYP4F22:NM_173483:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(5.8=100)
A:
NA
C2:
PF0006717=p450=PD(11.0=85.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGACCCGGACAACCCAC
R:
GCTGAACCTGAACTTCGAGGG
Band lengths:
357-894
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)