HsaINT0044467 @ hg38
Intron Retention
Gene
ENSG00000186204 | CYP4F12
Description
cytochrome P450 family 4 subfamily F member 12 [Source:HGNC Symbol;Acc:HGNC:18857]
Coordinates
chr19:15696430-15697174:+
Coord C1 exon
chr19:15696430-15696512
Coord A exon
chr19:15696513-15696907
Coord C2 exon
chr19:15696908-15697174
Length
395 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
GTCCCCACTCCCGCCTGCAGGAA
3' ss Score
9.37
Exon sequences
Seq C1 exon
GTCTACGACCCCTTCCGCTTTGACCCAGAGAACAGCAAGGGGAGGTCACCTCTGGCTTTTATTCCTTTCTCCGCAGGGCCCAG
Seq A exon
GTAAGAGCGCCCTGTGTCTGAGGCAGGGATGGGATGATGGGTGCGGGAGTTAAAAAAAGGGGGACGTTGCAGATGGTCCCAGTTCCAGCTCTCCTTCCCTCCATTCCTTCACAGTTTATGGGAAAACGTCCATAGAATGGGGATGAGTAGGTCCTAGAGGGGTCCGCGGAGTGCTCAAAATCCCCTTCTCCATCTGCTGGTCTGAGCTGGGAGCTGGAGTCAGGCCCAGTCTCCGGGACATACAAGCCCACATGGGAGTCCCAGGCACGCTTAGTCTTTCTCTCTCTCTCTCAGGCTGAGCTGGGTGCAGTTGGGGGTCCCAGGCCAGGTTCCTGGGTTGATGGGACCCAAATGCGGGTCTTGGGCACAGTCACAGTCCCCACTCCCGCCTGCAG
Seq C2 exon
GAACTGCATCGGGCAGGCGTTCGCCATGGCGGAGATGAAAGTGGTCCTGGCGTTGATGCTGCTGCACTTCCGGTTCCTGCCAGACCACACTGAGCCCCGCAGGAAGCTGGAATTGATCATGCGCGCCGAGGGCGGGCTTTGGCTGCGGGTGGAGCCCCTGAATGTAAGCTTGCAGTGACTTTCTGACCCATCCACCTGTTTTTTTGCAGATTGTCATGAATAAAACGGTGCTGTCACCTCTGCCTGGGCCTCACTGACAGCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186204:ENST00000550308:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(5.8=100)
A:
NA
C2:
PF0006717=p450=PD(10.6=81.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACGACCCCTTCCGCTTT
R:
CTGCAGGCTGTCAGTGAGG
Band lengths:
349-744
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development