RnoINT0044593 @ rn6
Intron Retention
Gene
ENSRNOG00000032895 | Cyp4f4
Description
cytochrome P450, family 4, subfamily f, polypeptide 4 [Source:RGD Symbol;Acc:708363]
Coordinates
chr7:14906228-14907305:+
Coord C1 exon
chr7:14906228-14906310
Coord A exon
chr7:14906311-14906686
Coord C2 exon
chr7:14906687-14907305
Length
376 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
CCCACTCCGTCCTCACGCAGGAA
3' ss Score
8.99
Exon sequences
Seq C1 exon
GTCTATGATCCCTTCCGCTTCGACCCAGAGAATATCAAGGACAGGTCACCTCTGGCTTTTATTCCCTTCTCCGCTGGGCCCAG
Seq A exon
GTAATGCCAGGAGACTTGAGATGGTGGGGGCAAAGGTTTAGGCAAGATGGAAAAGATGGAAAGTTGGGACGTTATGGATCTGGATCCGGTTCCTGTATCTTGACACGTTAAGAGGTACAGAGCAAGGCTTGGAGAAGTCCAAGAAACACAACCCTGGGCTCATATGCTCATGATAGTTGGGTTCTGAGGTCTGATTGAGGTTCACCCGTTGCGACACAGGCGAGGGGTCCCAAATAAGTTAGTTCCCCCTGGGTGCCCTCCAGTTGGCTGACCAGTGGAGGAAGGTACCGAGGCCAGATTGAAATTACTGAAGTGACAGGTGGGTTCTGAACGGGATTCAGGTCACAGTCAGAGTCCCCACTCCGTCCTCACGCAG
Seq C2 exon
GAACTGCATAGGACAGACTTTCGCTATGAACGAGATGAAGGTGGCACTGGCGCTGACGCTGCTGCGCTTCCGCGTCCTGCCGGATGACAAGGAGCCGCGCCGGAAGCCAGAGCTGATCCTGCGCGCGGAGGGCGGACTATGGCTGCGCGTGGAGCCACTGAGCACACAGTGACTACGTACATCTGGACGGGTCCCACCCACCCACATACCTTTGTAGATGTCACCTGTGCCTGAGGCTCCTTGAATACCAGTAGGGGGCTCTGGAGGACAACAGGGAACCAGCAGTTGTGGCAGGGAGGGAGATGGGGTTGGTGCCCAAATTCCTGACTTCATCTGGCCGTTCGTGGGCCTCTACACTGTCCTTTAGCCTAGTTGGACTTACTCTCTTGGGCGACAGAGAGCTAAGGTAAGTGTCTAAGCAGGCTCGAGCTCACAGAATCTTTTAAATTGAGGTACATTTCCTGCCTTGACCTCCATTCTAATCTCAAAACTCTCATCCTGGGATTCTGAAGTGTTTCTGTGAAAACTAAAATTTTAGGTTTATTAAACCTAACAAGTCTGCCATTTGTTGCTGGGTTTTATTTTGTTTTGGTTGGTTGGTTGTTTTTTTGAATAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032895:ENSRNOT00000041034:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(5.8=100)
A:
NA
C2:
PF0006717=p450=PD(10.6=84.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGCTTCGACCCAGAGAATA
R:
CAACTGCTGGTTCCCTGTTGT
Band lengths:
358-734
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]