BtaINT0005473 @ bosTau6
Intron Retention
Description
Bos taurus cytochrome P450, family 4, subfamily F, polypeptide 2 (CYP4F2), mRNA. [Source:RefSeq mRNA;Acc:NM_001035042]
Coordinates
chr7:8565701-8566437:+
Coord C1 exon
chr7:8565701-8565783
Coord A exon
chr7:8565784-8566186
Coord C2 exon
chr7:8566187-8566437
Length
403 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
3' ss Seq
GCCCCCACTCCCACCCACAGGAA
3' ss Score
9.24
Exon sequences
Seq C1 exon
GTCTTTGATCCCTTCCGCTTCGACCCAGAAAACATCAAAGGGAGGTCACCTGTGGCTTTTGTTCCCTTCTCCGTGGGGCCCAG
Seq A exon
GTGAAGACAGCGGCCATCTGAGATGGGGGTGGAGAGGTGGGGGTAGGGGGCTGGGGGTGAAATTCCAGGTTAAGTGTGGGGCCAGGAAGGGGGAAAACTTTAAGATGGTCACTTTCTCTCCACTCCCCTCAGACATTATGGTAAGAGTCTGGGGAATGGTGGTGGGCTCAAGGAGGGGTTCATGGTGTGCTGAGGGGACCCGCTCCCCTGTCTACTGGTCTGAGTTCAGCAGTGGAGAGTGGACTAGGGTCTGGAGATATGCAAGCCCACATACGGTTCCAGGCATGGTTAGCCTCTTTCTCTATACTGTGGGTGGGAATGGGGGTTGTGGGCCAGATACCAGGTGTTTTGGGGTCCGGGTGAGGGTTCCGGGTGCAGTCAAAGCCCCCACTCCCACCCACAG
Seq C2 exon
GAACTGTATCGGGCAGACATTCGCCATGACTGAGATGAAGGTGGTCCTGGCGCTGACGCTACTGCGGTTCCGCGTCCTGCCGGACAAGGAAGAGCCTCGCAGGAAGCCAGAGCTGATCCTGCGCGCAGAGGGCGGACTTTGGCTGCGGGTGGAGCCGCTGAGCACAGGGCAGCAATGACCCATCACCTTCTTGCCTGGGATCCATCGTGACCCTAGACACCTCCAGATTCCCAGGAATAAAACTATGCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025748:ENSBTAT00000036366:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(5.8=100)
A:
NA
C2:
PF0006717=p450=PD(10.6=81.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTTGATCCCTTCCGCTTCG
R:
GAAGCATAGTTTTATTCCTGGGAAT
Band lengths:
334-737
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]