BtaINT0007907 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BCJ7]
Coordinates
chr7:8389985-8390630:-
Coord C1 exon
chr7:8390548-8390630
Coord A exon
chr7:8390163-8390547
Coord C2 exon
chr7:8389985-8390162
Length
385 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
AGCCCTGACTCCTTCCACAGGAA
3' ss Score
9.21
Exon sequences
Seq C1 exon
GTCTATGACCCCTTCCGCTTCGACCCAGAAAACATCAAAGGGAGGTCACCTCTGGCTTTTATTCCCTTCTCAGCAGGTTCAAG
Seq A exon
GTGAGGGCATTGGGCATTTGAGGTGAGGATGGAGTAGTGGGGGCGGGGGTCTGGGGCTGAGATTCCAGGCGTGACTGTGGGGGCAGGGAAGGGGCAAAACTGAAGATGGTCAGAGTTCTGGCACTCCTTCTCTCCCATCCCCCTGGGAATGGTAGTGGGCGCAAAGCAGAGTCTGCAGTATGCTGAGAGCGGGGTTCCTTTGCCTGCTGGTCTGCATTCTAGACTGTGGTCTGGGCTAGGCTCAGGGGATATGCAAGTCCACGAAGGGGGGTCCCAGGCATGGTTAGCTTTCTCTATCTCTGCCAGTCAGATTTCAGGCCCTTTGGGGCCGAGATGAGGGTTCCCCTGACTCTGAGTGTAGTCAGAGCCCTGACTCCTTCCACAG
Seq C2 exon
GAACTGCATTGGACAGACGTTTGCCATGACTGAGATGAACGTGGTCCTCGCTCTCACCCTGCTGCGCTTCCGTTTTCGGCCAGACAAGGAGGAGCCACGCAGGAAGCCGGAGCTGATTCTGCGCGCGGAGGGTGGACTTTGGCTCCAGGTGGAGCTGCTGAGCGCAGGCCCTCAGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039337:ENSBTAT00000040185:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.017
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(6.7=100)
A:
NA
C2:
PF0006717=p450=PD(12.4=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTATGACCCCTTCCGCTTC
R:
GCTCAGCAGCTCCACCTG
Band lengths:
246-631
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]