HsaINT0044467 @ hg19
Intron Retention
Gene
ENSG00000186204 | CYP4F12
Description
cytochrome P450, family 4, subfamily F, polypeptide 12 [Source:HGNC Symbol;Acc:18857]
Coordinates
chr19:15807240-15807984:+
Coord C1 exon
chr19:15807240-15807322
Coord A exon
chr19:15807323-15807717
Coord C2 exon
chr19:15807718-15807984
Length
395 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
GTCCCCACTCCCGCCTGCAGGAA
3' ss Score
9.37
Exon sequences
Seq C1 exon
GTCTACGACCCCTTCCGCTTTGACCCAGAGAACAGCAAGGGGAGGTCACCTCTGGCTTTTATTCCTTTCTCCGCAGGGCCCAG
Seq A exon
GTAAGAGCGCCCTGTGTCTGAGGCAGGGATGGGATGATGGGTGCGGGAGTTAAAAAAAGGGGGACGTTGCAGATGGTCCCAGTTCCAGCTCTCCTTCCCTCCATTCCTTCACAGTTTATGGGAAAACGTCCATAGAATGGGGATGAGTAGGTCCTAGAGGGGTCCGCGGAGTGCTCAAAATCCCCTTCTCCATCTGCTGGTCTGAGCTGGGAGCTGGAGTCAGGCCCAGTCTCCGGGACATACAAGCCCACATGGGAGTCCCAGGCACGCTTAGTCTTTCTCTCTCTCTCTCAGGCTGAGCTGGGTGCAGTTGGGGGTCCCAGGCCAGGTTCCTGGGTTGATGGGACCCAAATGCGGGTCTTGGGCACAGTCACAGTCCCCACTCCCGCCTGCAG
Seq C2 exon
GAACTGCATCGGGCAGGCGTTCGCCATGGCGGAGATGAAAGTGGTCCTGGCGTTGATGCTGCTGCACTTCCGGTTCCTGCCAGACCACACTGAGCCCCGCAGGAAGCTGGAATTGATCATGCGCGCCGAGGGCGGGCTTTGGCTGCGGGTGGAGCCCCTGAATGTAAGCTTGCAGTGACTTTCTGACCCATCCACCTGTTTTTTTGCAGATTGTCATGAATAAAACGGTGCTGTCACCTCTGCCTGGGCCTCACTGACAGCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186204-CYP4F12:NM_023944:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(5.8=100)
A:
NA
C2:
PF0006717=p450=PD(10.6=81.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACGACCCCTTCCGCTTT
R:
CTGCAGGCTGTCAGTGAGG
Band lengths:
349-744
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)