HsaINT0044523 @ hg38
Intron Retention
Gene
ENSG00000186526 | CYP4F8
Description
cytochrome P450 family 4 subfamily F member 8 [Source:HGNC Symbol;Acc:HGNC:2648]
Coordinates
chr19:15628302-15628595:+
Coord C1 exon
chr19:15628302-15628435
Coord A exon
chr19:15628436-15628530
Coord C2 exon
chr19:15628531-15628595
Length
95 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCCC
5' ss Score
5.96
3' ss Seq
TGTCCTCTCCTGCACGACAGGGA
3' ss Score
8.28
Exon sequences
Seq C1 exon
GGACGACCTGGCCCAGTTGCCCTTCCTGACCATGTGCCTGAAGGAGAGCCTGCGGTTGCATCCCCCAATCCCTACATTCGCCCGCGGCTGCACCCAGGACGTGGTGCTCCCAGACAGCCGAGTCATCCCCAAAG
Seq A exon
GTGCCCTCCATGGCAGGGGAGGAGGGTCCTGGGCAGGGCGGTGGTCCCAGCAGGCAGCTCGGACCTTGTTCTTACTGTCCTCTCCTGCACGACAG
Seq C2 exon
GGAATGTCTGTAACATCAACATCTTCGCAATCCATCACAACCCCTCAGTCTGGCCAGACCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186526:ENST00000325723:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.7=100)
A:
NA
C2:
PF0006717=p450=FE(26.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTGCCCTTCCTGACCATG
R:
TGAGGGGTTGTGATGGATTGC
Band lengths:
168-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development