BtaINT0007543 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MCD3]
Coordinates
chr7:8468604-8468897:-
Coord C1 exon
chr7:8468764-8468897
Coord A exon
chr7:8468669-8468763
Coord C2 exon
chr7:8468604-8468668
Length
95 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTC
5' ss Score
7.46
3' ss Seq
TGCCCTCTCTTGTTCCACAGGTG
3' ss Score
13.72
Exon sequences
Seq C1 exon
GGACGACCTGGCCCAGTTGCCCTTCCTGACCATGTGCATCAAGGAGAGTCTGCGATTGCACCCCCCGGTCTCGGTCATCTCCCGCCGCTATGCCCAGGACACTTTGCTTCCAGATGGCCGGGTCATCCCCAAAG
Seq A exon
GTACTCACAATGACTAAGGGAGGAGTTTCCTGGTGAGAAAGAGGGGTCAATGAGGCAGTGAGGACCTAGCCCTGCTGCCCTCTCTTGTTCCACAG
Seq C2 exon
GTGTTATCTGCCTCATCAATATTATTGGGACCCACCACAACCCATCTGTGTGGCCAGACCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038549:ENSBTAT00000036364:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.7=100)
A:
NA
C2:
PF0006717=p450=FE(4.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTCCTGACCATGTGCATC
R:
CACACAGATGGGTTGTGGTGG
Band lengths:
167-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]