MmuINT0071532 @ mm9
Intron Retention
Gene
ENSMUSG00000062464 | Gm9705
Description
predicted gene 9705 [Source:MGI Symbol;Acc:MGI:3780112]
Coordinates
chr17:32771124-32771438:+
Coord C1 exon
chr17:32771124-32771257
Coord A exon
chr17:32771258-32771373
Coord C2 exon
chr17:32771374-32771438
Length
116 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTCC
5' ss Score
3.24
3' ss Seq
TGGATCCTCCTACCCAACAGGGA
3' ss Score
6.72
Exon sequences
Seq C1 exon
GGACGACCTGGCCCAGCTACCCTTCCTGACCATGTGCATCAAGGAGAGTCTGCGGCTGCATCCCCCAGTCATAGATCTCCTCCGCCGCTGCACCCGGGACATTGTGCTACCTGATGGCCGGGTCATCCCTAAAG
Seq A exon
GTGTCCTGAAAGTCAAGGGCGAAGGGAGGAGCAGATGGGAAGCATCTGAGTAGGGTGATGGTCTCTAGGGGCAGCTTGGACCTGGCTAGTACTGACTGGATCCTCCTACCCAACAG
Seq C2 exon
GGAACATCTGTGTCATCAGCATCTTTGGTATTCATCACAATCCATCAGTCTGGCCAGACCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062464-Gm9705:NM_001100187:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.7=100)
A:
NA
C2:
PF0006717=p450=FE(4.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGACCTGGCCCAGCTA
R:
TGGCCAGACTGATGGATTGTG
Band lengths:
189-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: