HsaINT0046599 @ hg19
Intron Retention
Gene
ENSG00000140995 | DEF8
Description
differentially expressed in FDCP 8 homolog (mouse) [Source:HGNC Symbol;Acc:25969]
Coordinates
chr16:90015825-90020784:+
Coord C1 exon
chr16:90015825-90016046
Coord A exon
chr16:90016047-90020650
Coord C2 exon
chr16:90020651-90020784
Length
4604 bp
Sequences
Splice sites
5' ss Seq
CAGGTCCGT
5' ss Score
6.47
3' ss Seq
TGGCCCTGCCTGGCCCTCAGGTG
3' ss Score
8.44
Exon sequences
Seq C1 exon
CAGGTGCCGAACCCACGGCCAGGCTTCCGTGGCCAGCAGCCCTAGAGGAATGGCCATCCTGTCCCTGCGAGCCCCTGGGCCCTGGCAGGCGATGCAGGTATGGGCAGACAGGACGCTGTTGACTCCGCACACCGGGGTGACTTCTCAGGTTCTCGGGGTGGCAGCTGCAGTGATGACACCGCTTCCTGGTGGTCACGCCGCGGGCAGGACGCGGGAGGCCAG
Seq A exon
GTCCGTGCATCCCGCGTGTCCTGAGCTTCGGCCCAGGGTCCCTCCGTGCCCCGGAACCCCGCCGGCTTTCTTCGGCTTCCTTTCATTGCTAAGTTGTGGGGTCCTCCCCGATGAGAGCAGTGGGCTCTAGAGGAGGGGCAGGGGGTGGCCAGACCTCTTGCTTTCACTCTTCCACTTCCTGCCCGCTCCTTTCTGAGGCCAAGTCCCACATCTGGGTGCAGAACTGGTGGGGTGAGCCTGGTGAGAGGGGCAGGCTGGCGTTCTGCTCAGAGTCGGCCACTGTGGCCGGCATCCCCAGGTCTGTGTGAGCAGAAGCTAAGGCTGCGAGGCCAGCGGCCTCCCCTCATTCATCCCCTGCCCGTGCGCCAGGCCTGGGGCTGGCACTGACTGTCAGTAAATAGGCAAATAAAAGATGCCTTTTTTCACAGCCCGGAGGAGAGCTGGTAGCCTAGAGTACAGCTGCTGGGCAGAACGGAGGTGTCCCTGCCAGCGTGCCTTCCTTGACGCTCCTCTGGCCATGTTTTAAACACCAGGAGGTTTCCAGCGGCTTCCCCAGGCGTAGCTCCTGCACCTTTTTCCTGGGCTGGTCACCATATGTGATGACAGTGCCAGTCTGTTCTGAGCAGCTCTGGGCTCCTGGCTTCACTGACATCATAAACAAGTCCTTAGCCCTTCCATCCACCCCAGAAAGTAGGTGTTCCCCCTGATTTATAGGCAAGACAATGGAGAACCAGAGTCTAAATCAGGGCTGATTTTTTTTTTTTTTTTGAGATGGAGTTTTGCTGTGTTGCCTAGGCTGGAGTGCAGTGGCACAATCTCGGCTCACTGCAACCTCCACCTCCCGTGTTCAAGTGATTCTCCTGCCTCAGCTTCCCAAGTAGCTGGATTACAGGCATGCACCACCATGCCCAGCTAATTTGTTTGTGTTTTTAGTACAGACGGGGTTTCACCATGTTGGTCAGGCTGGTTTGAACTCTTGACCTCAAATGATCCACCCGCCTCAGCCTCCCAAAGTGAGCCACCACACACCGGCCATGATTCTTAAAAATAACAGTAATAGGCCAGGCATGGTAGCTCACACCTATAATCCCAGCAATTTGGGAGGCAGAGGCAGGAGGGTTGCTTGAAGCCAGGAGTTTGAGACCAGCCTGGGCATCAGAGTGAGACTCCGTCTCTACAAAAAGTTAAAAAAAATTAGCTGAGTGTGGTGGCACACACTGGAGTTCCAGCTACTTGGGAGGCTAATATGGGAGGACCCCTTCAGCCCAGGAGTTTGAGGCTGCAGTGAGCTGTGATCGCACCACTGCACTCCAGCTCGGGTGACAGAGCAACACCCTGTCTCAAAAAAAAGTAATAATGATAAATTATAATCAATATTTATTGGGTGCTTACTATGTGCCGGCCAGTGTTCTCTGAACTTAGTATTAACTACTTTAATCTTGACAATAACCCTGTATGGTACTATTGTAATCCCCATTTGAGACATGGGAGAATGGAGGCAGAGAAACGTTTATCCACTTACCCAAGGTCACACAGCTAGGAGCTAGCAGAGTTGGGATTCAAGCTGGACGTGTCTGTCTTGTTACCATGAAACTATTGGGATCATCAGTCAGAATCTTTTCTTTTTTTTTTTTCTGAGATGGAGTCTCACTCTGTCACCCAAGCTGGAGTGCAGTGGCTCAATCTCGGCTCACCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGATGCCCACCACCACGCCCGGCTAATTTTTGTATTTTTGGTAGAGACGGGGTTTCACCAGGTTGGCCAGGCTGGTCTCGAACTGCTCACCTCAGGTGATCAGCCCACTTCTGCTTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGAGCTGGGTCTTTCAGTCAGAATCTACTTTGGCCGCAAGAGACAAAAACCTCCCCTATAACACTGGTGGGAATATCGTATTTCTCTCACTTGAATGAAGTCTGGCTGTGAGCAGCTTAGGGCTCAGGTGCAGTCCCCTGCAATCACGTCACTCTCCCCAGTGTGGCTATTCCAGCTGCAGCCTTTACATCTGCATTCCAGGCAGCAGGAGGCAGGGATGGCTGAAGAGGGGCAGCCCCTACCTTTAAGGACAATTCTCAGAAGTCTTTTCTTTTTTCTCATATGTATGTATACACACACACACATATATATGTATATACACACACATACATATTTATGTAAAAAAGATTTTTTTTTTTTTTGATATGGAGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGTGCGTTCTCGGCTCACTGCAAGCTCCGCTTCCTGGGTTCACGCTATTCTGCTGCCTCAGCCTCCCGAGTAGCTGGGGCTACAGGCGCCTGCCACCACACCTGGCTAATTTTTTGTATTTCTAGTAGAGACAGGGTTTCAATGTGTTAGCCAGGATGGTTTCGATCTCCTGACCTGGTGATCCGCCCGCCTCGGCCTCCCAATGTGCTGGGATTACAGGCGTGAGCCACGGCGCCCAGCCCATATTTGTATAAAATTTAATAGAGATAGGGCCTCATTGCATTGGGCCTGGCCGGATGCCGTCCTCCTGCCTTGGCCTTCCAGAGTGCTGGGATTATAGGTGTGAGCTACCACGCCCGGCCCATTACTGTTGTTTTCAGATAGCCCTGATTTAGTCTCTGGTTCTCCCTTTTCTTGCCTATAAATCAGGGAGAACACGTACTTCCTGGGGTGGATGGAAGGGCTAAGCACTTGGGTATGTCAGTGAAGCCAGGAGCCCAGAGCTGCTCAGATCTGCCTGATCTTCTCAAGCCGAGGGGGTCAGAACAGTCACTTTACCAGGTCTAGCTGCTGGGGAGGCTGGGAAATTATGTGACAAACAAAAATGAGGCTCCTCATTCAGGAAGAAGGAGGAGTGATGTTGGGATGGCCTGATTTCTCCTGTGTCCTGGGTGCTCCCTGGGAGACTGGGGAGGTGCTGGCATCGGGTGGCCGCCTCTGACTCTGTGACCCACCCACAGTCATCAGGTAATAAGAGAAGGAGGTGGGACTGGGGCCCACTCACGTTCCCTGTGTCTTCCCCGTGCCTCCCTGTTGGGGTCCACGGGCAGCCTGTCCATGGGTGCTTTGTCCTTTCAGGCTGGCGTGCAGGTGCCCAACCCACACTCCTGCCCCACAGGCACAACAGGCAGGACAGGCCCCATAGGTGGTGTGGAGTCTTGCCCAGTTGCAGGGCAGCCATGTGGGGTTGGGGTGGCCTCCTTATCCCACTGCCAGTGAGGCAATTAGTTCAAATCCCAGTTCTTCCAGGCCACAGTGTGACCCTGAGCAGGGCCGTCCCCTCTGGGCTCAGCTCTCTTTCTTTTGGGAGAAGAGACAGAGGATAAATCATAGGATTGATTATTATAATTGTGAATTATTTCAGACTGTAGCAGGTGTAGTGAAAGCATAACTAACACTGTAGCAGGTGTAGTGAAAGCATAACTAACACTGTTGCAGTTACTGAACAACTTTAAAAAGACATCTCCGACTTTCTATAACATCAACAGACCTTACAGCGAGCTTACTTTGTGCTCAGTCTCTGTTAACTCATTTCACCCTCACAATGGCCCATTACGGATGGGGAAATGGAGGCAGAGAGGCTAAGGAATGTGGCCCAGGAAGTTAAGTGGGAGGGCTGGATGCCAACTGCCTCTACTCCCACCCCAACCAAAGTCCCTTCCTCCCTGCCAGGAGCCATCAGCCCTGTGTGTTCTGCAGTGTTCTGAGCCTCCGGGTGGGGAAAGAGCAATTCTTGATCCTGAGCTTCTGCCACGTGGAGAACTAGGCCCTTCCGGCCTGTTTCCTGGGTTCCTGAGGCACAGAGCCGTGGGCCTGGTTCAGGTCGTGTTGCTCATCACAGGATCAGAACCCAGGCCAGAGAGCCTGGATGCATTTGTAGGGGGCTTCTCTGTGTGCTGGCAGGGAATCCTCCCAAGATCCCCTGCTCCTGGGCATGGGGAAGGTGGGCCCTGCTCACTCACCTGTGGCAGAGCAGGAATGGGCCCTGGAACTGTCCCCAAGTGTCCAACCCTAAGTCCTGAGACAGGGGCTGTGGTTTCAGGGTGCTCTGACAAGAAAGCACCTTTGCTTGGGGCCCAGGAAGGAGGAACCCATTTCTGAGAGGTGTGTCTCACATAGCAGGTGGATAGCAAGCTAGAGCGGGGCTGAGTGAGTATCTGGGGCTGAGGCCCAGAGAGGATCCCATAGGTAGCTCTAGGGCTGGAGCTCTGCAACATTGGGCAAGAGGACCCTGTGCTGGGAGGCAGGGAGCTTGGGCCCCTCAGATGGGCCACGTGCCCTCGTGGGACCCTCATTGTCACCGTGAGCTCTTTCCAAGGGGACGCCACCAGTGGGGGCCTGGGCAGGAGGCAGCTGAGGTGTTTCAGGAAAAGGCTGAAGATCAAGGCTGTGGTGTGAGGACTACCCACTTTAGGGAAGTGAAAGAGGCCAGCCTCACCCCAGACACCCCAGTGTGGTTGGGGAAAGGGGGTGGTCCGTGGTGAGCCTGGTACCTGGGGACTCATCCTGGCCCTGCCTGGCCCTCAG
Seq C2 exon
GTGGGATGCTATGGAATATGATGAGAAGCTGGCCCGTTTCCGGCAGGCCCACCTCAACCCCTTCAACAAGCAGTCTGGGCCGAGACAGCATGAGCAGGGCCCTGGGGAGGAGGTCCCGGACGTCACTCCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140995-DEF8:NM_207514:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.586 A=NA C2=0.706
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)