MmuINT0048107 @ mm10
Intron Retention
Gene
ENSMUSG00000001482 | Def8
Description
differentially expressed in FDCP 8 [Source:MGI Symbol;Acc:MGI:1346331]
Coordinates
chr8:123442986-123447912:+
Coord C1 exon
chr8:123442986-123443051
Coord A exon
chr8:123443052-123447787
Coord C2 exon
chr8:123447788-123447912
Length
4736 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
AGCCGTGCTGGGCCCTGCAGGTG
3' ss Score
6.98
Exon sequences
Seq C1 exon
ACAGTGTATCAGCGGCGGCGAACTACAGTGTAGCCAGCCGGTCCGGTACAATGTAGCGGCAGCCAG
Seq A exon
GTAAGCCAGAAAGCGGTCTCTGTAGGTGTCGGGGGGGTCTGGTGGGAAAGCAGGCGAGGGTCCAGATCTCAGCATGCAATCGCCACTGGTCGGACTCCGGGATCGGGCTTCTGACCCACGCACTCATGGTGCAGAACTGGCAGAGGCCTCAAGCAAGACGTCCAGCTCCCGGCTGCCGCCTGCTGGCTCTCCGCTGTGCGCAAGGCCTTGGTGACCTCATTGGTCCCCGCAGTACGTAGGGCAGAGCTTAGCGTCCACAGATGCCGACCCCCACCCCCAATCACCGGGTGGCTTCAGAGCCTGAGTATGGGACTCCCGGCCCAAGGACCCGCAGGGACTCGCCTTCTGCTATGTTGAGCTTTTCTGAGCCTTCGGTTTCACAACTATGAAATGGGTGAGGAAGGTCGTAGAGACCTGCCCCAGTGGGGACAGTCGCATCCTCAGAATGAATTCACGTTATAGCGGGTAGAAATGTGAGGTGCGCTTTGTTGCGCCTTCTGGGGTAGTTGAGAATTATTAACACTGGTCCTGCTTGGCCTGGATTGCCTGTCCATCCTTTTTAAGGGTGTGAGCAAATAGGATGTACTTTGGACTCCTGTGGCCCTTGGACTAGCACTTTTTGGTGGCTAAAGTAACACACCGGAGGCGGGCTCTTATTCACCATAATCTGTCTTGAACTTTCACCCAGTGCCTCTGATGTACCACAGACCCTTGGTCTTACTCTGAGGGTTTCAGTTGTCAAGTTGTAATTATTATTCGATTTAGGAGAGACCTCTGCAGGGGCTGGATGGAACAGTTTTCTTTTTTTTTTTTTTTTTTTTTGTCCTTTCTTGAGTATCTTTCCTGAGGCCAACCACGGATTCTGGGTGCAGATCTCTGTAAGGCTGGTGGGGAAATAGGAGATGGGGTCCTACTCAAAGCCGGCTGTTGCTTCCTGCAGCCTGGGCTGGGCTGAGGTGCTGTCTATTCGTACTCAGCTGAAAGAGCAATATGGTTCTCCAAACTGGTTCCAGACAAACCAGGAAGATGGGTTAAATGGCTCCATTGCTTAATTCATTCCTTGCTTTTGTTCCTGGTCAGGTGGTGGCAGTGCCAGTCAGGACATACATAAGGGAGCCATTTTCCTGGGAAAGGTAGCCCAGAGGAGAGTGGAGGGCAAGCTCTGGTCAAGGTCTCCCTGTCCCTCTGACTATATTCTAAACCATCGGGAGGTTTCCAGAGAAGGCGTCTGGAAGGGGCTCCTGTGGGCTCCACCCAGTTCCTTTAGACTGGGCTGGTCACCACATGGCGTCGGTGACTGCCCAGCAGCAACTCCCAGTTTCTGTTGTTACCAAACCACACACTCGTCCTTCCGCTCAGTCTTGGGCAAGAGAGTAGGGCTGCAATTGATTTCTTTCTTTCTTTCTTTTTTAAGATTTATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTACAGAAGAGGGCTTCAGATCTCATTATGGACGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCAGAAGAACAGTCAGTGGTCCTAACCACTGAGCCATCTCTCTCTGTCCAGCCCAATACATTCTTTTTTGGTTTTTTTTTTTTTTTGGTTTTTGGTTTTTGGTTTTTTCCAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATTCCACCTGCCACCACTGCCGGGCTTAAACCTTTTTTGTTGTTGTTTTTGTTTTTTTTTTTTTGAGGCAGGGTTTCTCTGTGTAGCCCTGGTTGTCTTGGAATTTACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCACCTGCTTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCTGGCGGAATTTTTCATTAATGAAGATTATCGTTATAGCAATTCTGATACCAGACCCCATGGAGATTGTCCCAGTGGTGATAGAAAAGAAAGCGGTCTGTGTGTGAATGCTTAGGCAGAAGTCTGTGTTTGTTTTTTGCTTTTTGTTTAGGCAGAAGTCTTAACTGCAAAGGAGAAATTTTTAGAGAAAAGGAACAACTGGTTTTGAGCAGCTCATGCTGCCAACAGAAAAATGAAGGCATTTTATGGTTTTTGTTTGTTTGTTTTTTGTTTGTTTGTTTGTTTTATTGGTTGGTTTTTCAAGACAGGATTTCTCTGTGTAGCCTGGACTGTCCCGGAACTTGCTATGTAGACCAGGCTGTCAGCCTTAGACTTGCCAAGGTCTGAGACAAGGCCAAGGTGAAGAGTTCTGCCTGCCTCTGCCTTCCAAGTGCTTCGATTAAAGGTGTGTCCCACCACTGCCTTGCAAGAATATAGTGTTTAAAGAAATGTCTTTCTCGTGGTTGAAGAGGATTTTTTTCCCATGAAGATGGAGAGAAGTGGCAGTTTGTCCCTGGAGACCTCCTGTCATTATCCTATGCCTGGTGGCGTTTTCCCTTGCAATATTGGGGTGGGTGATGGGCATGTCCCATAGATTGCTAACAAGAAAGGGGAGGACCTGGGCGAGTGCCTTTATGGATTAGGGGCTGAGCATCTGCCTCTTCCTGTGAGTGCTTAGCCCTACGTGGTAGTATTATTATTGATCTTTTGAGTGAGAAACTGGGAGCAGAGAAAGGCCAGGAGGCCGGTGTTCAGGCTGAGGCTGTCCATCTTCTTAGGGTGAGGTGACTGGAATGGTCTTTTGGAATCTTTTTTTGGCTGCAAGAGGCAGAGCTCAGCCTTCCAACAGCAGTGGTCTAAACAAGTCTGCTTCTGCCTCACCTGACTGAAACCTCGTGGTGAGCGGCCAGAGCGGAGGTGGAAGCGCTTTAGATCTGTCGTCTGGCAGTCCTCGTGAGTGGCTTCTGTCATAGCTCAAGGTGGCTGTGTCAGCTTCACTCGTTACGCCTCCGTTCCGGTCAGAGGAGGAAGGGCGGGAGAACAGGTCTGAGAAGCCCTAAGTGATCTTTCTGTTCGTGTTCCATTGATCAGGACATAGTCACATTACCATGCCTAGGTGCAGGGCAGTCTGGGAAGTCACGTGACAAGAGTGATGCCCTCCTCATGCAGGGTGAAAGGGTGAGTGAGCCCTGGGACAGTTTAATCTCGCCTGTACTCTGGCTGCTCCTTAGGATGCTTGGGAGGTACTGGACATTGGTCGGGGACCCACGACTGTAGCACCCAGGGTGACTCATCCAAAGGGATCAGCCAGGGCCCCTGCATCTCCTTAGACCCTTAGCAGCTGTTGGTGCTTAGTAGACTGGAGCTATGGCCTTCTCCCTGAATGGAGGCAGGGCCAGCAGGACATGGTCCGTGTGGCTCTGGAGAGAGCTTTTGCCGAGCGCTGAGGGGCCGTCAGTCCAGGATACCACCCCACGTGGTGAGGATTGAGCAGGACTTGCCTCTCTGGGCTTAGTGCTTTTATTTCTCTTCAAGTGAAAGAGCAGGGAAAGATTGAGTTCATCTTGTTTCTGACTGATGTAGGCACGGAGAAAGCACACTACGTCCCCAGGCACCCACGGCCCCGCTCTACACTCACCTCTGACTTCCCATCGTCATAGCAAACCTTGTATAGATGTTTGTTTTCAAGACAGGGTTTGCTCTGTAGACCAGGCTATCCTCTAACTCAGAGATCTGCCTGCTTCTGCCTTCCCAGTGCTGGGATTAAATGCATGCAATGCCACACCTGGCATGTACAGATGTTATTTTGTGCTCAGGGTCTATGAATAATTTCACCCACAGTGACCCACCTCTGGATGAGGGAGCAGAGGCGGAGAGAAGCTATGGAATGTGGCTTGACTAGATAAGTGGAGAACTGCATTCCAACTGCTCCTGGTTCATTCAGACACAGACAGCCCCTCCCTTCTGCCAGGAGCCACCAGATTTTGTGTTCCCATTGTGGGCTGAGCCCTAGGGAGGGGACAGAGTGTCTGGTGATCTTAACTTCTGACAAGTGCGGACCTGAACACTTCTGCTACACGCAATCCCATGGCAGGGACAGCTCAGGCCATGTGGTCGTGACGTAGGACAGGAACTGAAGCTTGAGAGGTACCATCTCCTACTAGAACCCAGTTGCATTGTTGGGGCCCGGGGAGGGGCCTAGGTCACCCTGCCAATAGCAGGCCAAGGATGGGCCTTGGATTTAACTCCAGAGAATTCCCTGGTAAACACTGGTTAACGAGGATGGTATTTTTTGGGTGTTTTGTTGTAGGGAACATCTCAAGTAAGGGGACAGGAAGGAAGATCCAGTTCCAAGAGGTGTGTCTCATAGGAGACAGCTAGAAGCAAGGGCCTGACTAGACTGGAGCCAAGTGAGAAATCTGCCCTCTTGAGGCCTAGCACAGAGCCGGCTGAAGAGTTCCAAGACCAAGTGAAACCCCTCCAGGAGTAGGACCTAGGATTCCAGACTTTCTGTCAGACACCCTTGGATAAGCCTGTACCCCTGGGCTAGCCCTTATCACTGGGGAGTTCTGAGGAAATGCCACCAGGGGAGCATGGTTAGAGGTAGCTGTGTTGGCTTTAGGGGGAGGGTAAGGATTGAGGCTGCTTTGTGGGGTTGCCCTGCTATATCTACCCCATGTCCCCAGCCTTGGGGAAGTGAAGGAGCCAGGGTGTTGTTGGAGAAAGGGGATGAGCCATGACGAGCCTGGGACACTCATCTCAGCCGTGCTGGGCCCTGCAG
Seq C2 exon
GTGGGATGCTATGGAATATGATGAGAAGCTGGTTCGGTTCCGGCAGGCCCACCTCAACCCCTTCAACAAGCAGCTTGGTCCGAGGCATCATGAACAGGAACCCAGTGAGAAGGTCACTTCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001482:ENSMUST00000065534:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.560
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
ENSMUST00000001522fB1263
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types