BtaINT0047967 @ bosTau6
Intron Retention
Gene
ENSBTAG00000039014 | DEF8
Description
differentially expressed in FDCP 8 homolog [Source:RefSeq peptide;Acc:NP_001092427]
Coordinates
chr18:14775250-14779635:+
Coord C1 exon
chr18:14775250-14775303
Coord A exon
chr18:14775304-14779513
Coord C2 exon
chr18:14779514-14779635
Length
4210 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CTCTTCCCGGCTGTCCGCAGGTG
3' ss Score
11.42
Exon sequences
Seq C1 exon
GCTGTAACGAGCCCGGCGGGGCGGCTACAATGTAACCGGGGCGGCGGTGGTCAG
Seq A exon
GTGAGCGGCGGGAGGGGCGCGGGCGGGGTTCTGGGTGGCGGGGACTCGGACGCTCGGGCCGCCGCGCCCCGGAGCCCGGGGAGCCTCTCTCCCGAAGTGGACACCGGGGCGTAGGGGGCGAGGAACCCGGCCGAGGCCCAGGCCCGGGCGCAAAGCAGGATTCAGACTCCCGGGCGATCACCTGGGGGCAGAGGGGCTTGGGGACCTCAGCGGCCCCGATCCCGCTCTGTCAGGGTCTAGCTGGGAAGGCCGTCCTCGGGCACACTGTCACCCCTTCCAGCTGTCACCGCGCGCGTCTGTGGGATGCGAGAGGGCAGAAGGGACCCCACGGCTGTGCCACGGTGCTCTGGGGCTGGACCACTCTGAGCCTGTTTCCTCATTTCTTAAACGGACGGGGTGTGGTGGAAGACAGCTGGCCCTGTGCGGAGCCACTTAGCGAGGGTCCCCAGAGTGTATGTTGCTGCTGTTGTTGTGGGTGAGGGTGGGGGAGGCCCTCTTGGGGTGGCGTCACCCAGAGGTGGGGGTGGCGCTGCCAAGCTTCAGTGGCAAGCAATCCTTAAAGGGACAGTATCGGCCCTTCTCCCGGTGGGGTCCTGGAGGCCTCCTCATGGCCGTGAGCAGCTAGGGTGCACCTTTGCCCTGTCCCCTCTGGTGCAAAGTTTAGGGACCTCTGGTGGTAGCCGGGTGAGGACAGGACCTCTGGTGGCTGTGTCACAAGCAGAACGGGCAAGGCTGGTTTGGGCACATCTGAGCTTCAGCCCTGTGTTCCTCAGGGCCTGAGAGATGCTGGGCTTTGTTCTCAGGGTCCTCTAGTTGCAAAGTCGTGGGCTCCTCACCCTGACCCTGGTGAGAGGAGGTCTCTGGAGAAGGGGAGACAGTGGACTAGTGGGTGTCCTGCATGCTGCTTGCTCAGTGTCCACCTTCTGGCCTGCTCCTGTCTGAGGTCAGGCCTGAATTTGGGGTGCAGAGCTGAGATGTGGGTGAGATGTGGGTGAACCTGGTCGGGTGGTGAGGGTGGCTATTGCTCTCCTCTAAGCCAGTGGCTGCACACTTTGTCTGCTGGGCCCCTGCATTAGGACCCCTTCTGGCTGCTCCAGGCACCCCCTTCTCCCTGGAAAATGCAATTTTCTTAACTTTGGCAGGAGAGGAACTGAGGCTGAAAGAGGTCAGGTTACCCAGTCACTCACTCATCCATGGCCTCTCTGCCTGGCCTACCCATCAGGAGCTTAATGAGAGATGCGATTTCCTGGAGGGCTTGTATCCCAGAGGAGGGCAGCTGAGCAGTGTTACTGCCTTTGAGCTCCTCAGGCCATGTTTTATTTTCTTTCTGACCAAGGCCTAAGAACGTGTGCATTTTATGTATTTTTAAAAATTTAAACGTGGTTGATTTACAATGTTGTGTTAGTTTCCGGTGTACAGCAAAGTGCTTCTGTTACAGATATAGATATCTTTTTCATGTTCTTGTCCATTATGGTTTATTACAGGATGTGGAATATATTTCCCTGTGCTATACAGTAGGATCTTCTTGTTTATACATCCTTTGTATAATGGTTTGCATCTGTTAACCCCATAACCCCAATCCAACCCCCACCCCCCCACTTGGCAACTGCGAGTCTGTTTTCTTGACACATCTGTGTGTCTGTTTCTGTTTTGCTGATAAGTTCACTTGTGTCATATTTTAGACTCCACATTTAAGTGATATCTATGGTATCTGTCTTTTGGACTTAGTGTGGGAATCTCTAGTTGCATCCATGTTGCTGCAAATGGCATTATTTCATTCTTTTTTATGGCTAATATTCCATTGTGACGGAGAAGGCAATGGCACCCCACTCCAGTACTCTTGCCTGGAGAATCCCACGGACGGAGGAGCCTGGTAGGCTACAGTAGTCCATGGGGTCGCTAAGAGTCAGACATGACTGAGCGACTTCACTTTCACTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACAGAGGAGCCTGTTGGGCTGCCGTCTATGGGGTCGCACAGAGTCGGACACGACTGACGCGACTCAGCAGCAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCTCCAGAATGCAGGGGAGACCCAGCTGTCCCCATACTCACCAGCCCCTTCTTCCCAAGTGGTGAAGAATCCCTGGCTGCTCACCCCCAGGCTTCATTCAACTGAGACACAAATAAACTTCTGTTTAAACTACTGTTACCAGGAGGAGGATTTCTGTCTCTTGCAGCCAAAACAGATCCATACTAATGACCCCCAACAGACTGTGATCAGCAAGCAAATTGGCCCTACTCAAATCCACACTCTATCAGCTCTAGCTGTGTGACCTTGGGCAAATGCCTAAACCTTTCTGTGCTTTTGAGCTGTCATGTTTCAAGTGGGGATAATAATAGTATCCGCTGTAAAGAGTTACTGTCTAAACGAGACTACAAACTGGAGAGTAAGCACAAGTGCATGGCAGTCAGTCCAGCCCCCAAAGACTGGAGGGTCAGGAGCCACCCCCATGGGTCTCTCCTCAGAAACCTCTCAGCATTTTACAATACAGCCAGAGGCATTAGAGAGAACAGGATGACATTCCTGAAAAAACTAGAAACAGACTTGCAATATGATTGTGCAATGCCACTCCCAGGCACACATCTGGAGAAAACTGAAATTCAAAAAGATATACACACCCAGCATCCATCAGAGCACTATTCACAATAGCCAACACATGGAAAGAACTTACATGTCCATCAACAAATGAGTGGATAAAGGTGTGGTACAAATACACACAATGGGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACGGGGGAGCCTGGTGGGCTGCCATCTATGGGGTCACACAGAGTCGGACACGATTGAAGTGACTTAGTAGTAGTAGTAGTATACTGTATTGGTGTTTTGCTTTCTGGCTTACTTCACTCTGTATAATCGGCTCCAGTTTCATCCACCTCATTAGAACTGATTCAAATGTATTCTTTTTAATGGCTGAGTAATACTCCATTGTGTATATGTACCACAGCTTTCTTATCCATTCATCTGCTGATGGACATCTAATTCTTTAAAATCTCTTGCCCTCTGATCAGCAATGGGGATTTGGTTTTTTGGAACATGAGTCCAGCTTCTTCCCAGGATTGTCAGCTTTCCCAATAAAGCTATCTTTGCTTTTACCCAAAAAAAAAAAAAAACACACACACACAATGGAATGCTGCTGCTGTTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTCAGCTAGTTAAGTGTGGGCCTCTGTCTCAGGAGCCACCAGCCCTGTATGTCTGTGGTTTGCTGAGCTCCCAGCTGTGAGCTCAGCACTAGCTGCCTGTGCCCTTGGGTCCCGGGGTGTGGGGCCAGCCGTGGGCTCAGGCCGCATGGTGGTCATACAGCATTCAGAAGGCCTCTCCACAGGGCAGTGTTAAGGTCGGTCCTGCCCTGGGCCACACTGCAGGTGGCAGGGCAGGCCTGAGCCCTGGCATCAGCACTGAGCCTTCTGCTGGCCGGGCTTTCTGAGTGCTCTGACAGGGAAGGAGCACCCTGGGTCCCGGGCAAGAGGGAGACACTGAGTGTTGGCTGGCCAGGCGATGTGCACGGGACCAAAGGGGCTCTGTGCTGGAGGTCTGGCTGGGCACCCCCAGCCCTGCCTGCCCCATCGGTGACTTGGGCATCACTGCTGTCACTGAGGGGCCAGCTGTGGGGGCTGAGCTGACTTGGGGAGGGGTTCTGAGGGGGAGGCCATGGTGTGGGGATATTTGGCCTGGACCCTCCGGGAAGTGAGAGGGGCCAGGTCTCCCCTCTGATACCTCAGGCACTTGAAAAGGGAAGGGGACCCCAGTGAACCTGAGTGCTGGACACCCACCTCTGCTCTTCCCGGCTGTCCGCAG
Seq C2 exon
GTGGGGTGCTATGGAATATGACGAGAAGCTCGCCCGGTTCCGGCAGGTCCATCTCAACCCCTTCAACAAGCAGCAGCATGAGCAGGGGGCTGGCGAGGAGGCCCCGGGCATTACTTCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039014:ENSBTAT00000004669:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.579
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development