RnoINT0046325 @ rn6
Intron Retention
Gene
ENSRNOG00000000264 | Def8
Description
differentially expressed in FDCP 8 homolog [Source:RGD Symbol;Acc:1309008]
Coordinates
chr19:56243408-56244221:+
Coord C1 exon
chr19:56243408-56243476
Coord A exon
chr19:56243477-56244087
Coord C2 exon
chr19:56244088-56244221
Length
611 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAA
5' ss Score
5.13
3' ss Seq
AGCCGTGCTGGGCCCTGCAGGTG
3' ss Score
6.98
Exon sequences
Seq C1 exon
CGGCAGGGAGCTATAGGAACAACTCAGGCCATGTGGTCGTGACTTAGGGCTGGAACTGAAGCCTGAGAG
Seq A exon
GTACAATCTTGTATTAGAACCTACTTGCATTGCTGGGGCCAGGGAAGGGGCCTAGGTCACCCTGTTGATAGCAGAGTGAGGGTTGGCCTTGGATTTGACTTCAGGGGATTCACTGGTGACCAAGCTAACAAGGATGGTGTTTTGGGGGTGTTCTGTTTTGTAGGGAACATCTTAAATAAGGGGACAGGAAGAAAGATCCAGTTCCAAGAGGTGTGTCTCCTAGGAATAGGCCAGCAGCAAGGGCCTGACTAGACTGGGGCCAAGTGAGAAATTTGCCATTTTGAGGCCTAGAAAAGAGCCTTCTGAGGAGTTCCAAGGTCAAAAGAGCCCCTACCAGGAGTAGGGCCTTAGATCTCATACCCTGAGATAAGCCTGTGCCCCTGGGCTAGCCCTTATCACTGGGAGGAGGAGGGGTCTTCTAAGGAAACTACCCAGGGAGCGTGGTTAGAGGTAGCTGTGCTGGCTTTGGGCGAGGATAAGGATTGAAGCTGCTTTGTGGGGGTTGCCCTGCTCTACCCCATGTCCCCAGCCTCTGGGAAGTGAACGAGATGGGATGTTGGAGAATAGGGATGAGCCTGGGACGTTCATCTCAGCCGTGCTGGGCCCTGCAG
Seq C2 exon
GTGGGATGCTATGGAGTACGATGAGAAGCTAGTTCGATTCCGGCAGGCCCACCTCAACCCCTTCAACAAGCACCTTGGACCAAGGCATCATGAACAGGAACCCAACGAAAAGGCCCAGGAAGTCACTTCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000264:ENSRNOT00000000281:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.595
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCAGGGAGCTATAGGAACA
R:
AGAAGTGACTTCCTGGGCCTT
Band lengths:
199-810
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]