HsaINT0047336 @ hg19
Intron Retention
Gene
ENSG00000157680 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:2855]
Coordinates
chr7:137170120-137172435:-
Coord C1 exon
chr7:137172356-137172435
Coord A exon
chr7:137170165-137172355
Coord C2 exon
chr7:137170120-137170164
Length
2191 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TTTTTTCATTTTCTCATTAGGAC
3' ss Score
10
Exon sequences
Seq C1 exon
CGATACCTCTGGGTATTCTAGTTGTGCGTGGAGACTGTGATTTGGAGACTTGCCGTATGTACATAGACCGCCTACAGGAG
Seq A exon
GTGAGTTTATTTAGCCAATTTTTTATTCTCCTCAACTTTCCATTTTTGTAAACAATTACCAGCCATATATATTTGCTTCTGAAATGATGCATTTGGAGAGGAAGTGGAAATGTGGTGGCTTTGTCCTTCAAGCATACGCTGTATGTCACCCTCTCCCACTGTCTCTGTTGTTCACTCCTCAGATGGTTGAAATGGGAAAGCATTGACTACAGGGTGCTGTTGCCCTGGTGTGTTCCATAACTATAGCTTGGAACTTGTCATTTTACCAGACACATACCTGTATATTTGAGATGTTCAGAATTTCAACAGGGACTGATAAATAATGAAAGAAAACAGTGATATTTAATGTTTTGTGTCTGACACTTATGTCAGAGACAGCTAGATTTTGTAAACAAAAAAATAAATAAAACTTCTATGGGAAAGAAAAATCCTCTACATCTCATAGGAATTTGTCAGAACACAAAAGAATAATCTATTTTTTTTTCTCAATCTAGTCTTGCTTTAGAGAAACAGAAAGGAAGTGACCCCGTATATGGCACTCCCATAAATGTGAACTGCACCAGCAAAGCCAGGAGACCCAAACTCATCATTACAATTGTTGTTGGTTGTTTTTGCAAAAATTTGAGGGGGAGTCTTAACCGTCTCCATTCCACAAATTGCAAAAAGCATATATGACGATTTCTTTATCATTTTTTTTGATGAAAGATGTATATTAGAGTCACTTTTCTTGGGTGTGGCCTAGACATTTGTATTTTTAAAGCTGTTGGGTTGTCTTGATACCCCTTGATAAGCAATTCTGTCCCAGACAACATGTTATACATAGGTAAATATTGTAAATAAAGTAGACACATACTGTTTAAAATCCCTCTGAGTTGTAACCACTTCACCCTGAATATTTGATTCTGTTTCTCTTGGTAGAAATAAATTCAGGGGAGAGGCACATAGTGATGTGAAAAATTACTGATTTTGAGAAATAGATGACAAATATTGAATACTGATGTGGATGAGAGAAAGATGGTCAACAAATTTTACACTTACGGCTTCATTAAGCTATTTTGACTGAGGATAGCTGCTTAAACAAGTTAAAATACGTGAATTTTTAGTGACTCAGGTCCAATTCTGTTAATATGTTCCCAAACTTCTAGTATCTCATTTCCCAAAATAATGTTTGTATTTTGCTGTGGAATCTCACTCCAGAAACCTGTAATGAAAAAAATGAATCATAATTGGTACCAAACCTTTTTACCTTTTTTTAAAATTAACACATGTAGAGCTTTGTTAACAAGACTTCACAGTAGAATAATATTAATACACGATTGATGAATTGACTTTGTTAAAAACCAACTTAACTAACTTAATAGCATGCTTAATGCACCAATATTCAACTAAAAGTAGGATTTTTAAAAAAGAGGCAACTCAACAAATAAAGAGGAAAAATTTTTAAAACTAATGGAAAGTAATGTGATGAAACCCTGTGGGAAACAGGTGTAAGGACAAAGGTACCCAGGATTGCTGACATCTGTGAATAGAATCACTACACTCATTAGCAAGGAAGCCTAGGAGGCATGACAATGGTGACAAGTTCGTTATAAAACTTTATGAAAGGAGTCAGGCTTTCACAATCTGCCAGTAAAACCTCATTAATTTCAACCCTGTTAATTTGCACTTTGTGATAATGTGGAGGTGGTTGGTGATTTTCTCTTTGTAGTCTATGAAAACCCCTATTTGCTAAGCGACTTATCAGTATAAACAGTTACCATGACAGTATGTATCTGGTCTGAGGTAAAGAAAAGCTTTCTAAGTGTTTAAAGGGATTTCCAAAGCCTTCTTCACAAGCCAAAAGTTTATATGCACATTAAATATAATCCCCATTTATCAGAACAAAATTGCCTGTCTTTTACTTCTGGTCTCCTCTATAGGAGATTGAAATAATAATATAACACTTACTTTAAACACTATGTAGGACTTATAGGTTTCAACAGCTTAATGACCTTCTCTCAGTCCAGCTTGGTTTGATTTTATTATTTCTGGCATTACCTTCTTTATTTAACCTTTATGAATTTGGGTGTGTTCGATACTTTCCAGATGAGCATAGTAATATTAAATTGGGAGTTCAGTTGAGATTGAGTTGTGGGGCAGCTTGTTCAAACTAATTTTAAGGTATGGATTTTTTTTTTCATTTTCTCATTAG
Seq C2 exon
GACCTACAGTCAGTTTCTTCTGGCTCCCAGAGAGTTCATTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157680-DGKI:NM_004717:23
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)