RnoINT0047024 @ rn6
Intron Retention
Gene
ENSRNOG00000026705 | Dgki
Description
diacylglycerol kinase, iota [Source:RGD Symbol;Acc:735049]
Coordinates
chr4:64472352-64474930:-
Coord C1 exon
chr4:64474851-64474930
Coord A exon
chr4:64472397-64474850
Coord C2 exon
chr4:64472352-64472396
Length
2454 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TCCCCTAATTTTTTCATTAGGAC
3' ss Score
8.75
Exon sequences
Seq C1 exon
CCATCCCCCTGGGTATTCTAGTTGTTCGTGGAGACTGTGATTTGGAGACTTGCCGTATGTACATAGACCGCCTGCAGGAG
Seq A exon
GTGAGTTGGTTTGTCTTATTATTTATTCTCTTCATATTTCCCTTAAGTAAACAATAACCAGCTATATACACATATAATTTATTCATATGTACATATATACACATATACATGTATACATAGACACACATACATCTATGCATGTATGCATATATATAGAACATATACACATACGTGTGTGTATGTGTGTGTGTGTGTTTCTAAAATGATATATGAAATGAAATGGCAACATGGTCTTGTCCTTTAAGCATAAACCTTCCCAATTCTACTGTTATTTCCTTCTGTTGCTATGGGAGAGGACCTACTGGATTAACTGTAGGTGCTGATGTCTTAGGGTGCTCCACGGCTATACTGTAGCTTGGAAATTCTGCCTTCTTGACAGGCTACGTAGCTCTATATCTTTAGCTGTTCAGAATTTCAAAAGAACTAATAAATAATAAAAGACCTTAGAGCTTTGAGGCTACTTGATGTTTTGGGTGTAGCACAGACTTCAGTCAGAGAAGTCTGGAATTATTTTTTTAATGACACTTTTTCCACAGGAAAGAGAAGCTTCCTATTAATGGAAATATGTCAGAACCAAATGGATACAATTTTCCCTTCATCTACTCTTGCCACTGAGAAACAGGAGGGAAGCGATCTCATGTATGACCGTCTTATAAGTTTGTCCTTTACTAACAAAGTCAGGGGACCCAAACTCATTACAATCACTGTTGCTTATTTTGGCAAAATGGTGTATATGTAGGTGTGGCAGGGTGGGGCAGGCAACGCTCTCCATCCCAGGAGTGCTGGCGGCATCTCTCTCCATCGCCGTTTCCAGATGGAAGACATCCGTTCCCCTTAGAGTCTCTTTCCTCAAATGCTGCTGGTTCTCCTAGAGGAACAACTGTTCCAGCCAACACATAATGCACAAAAAATGCAAATAACGTATAACGGAAGCTGATGTATAGTCTAAGTCCTGCTAACCTGTGGCCACTTGTCCTTGAATAGTATTACATCACACATCACTAGAAATTAATTTAGGCAGGAAATACATACTGACTGATAGTTCTGGAAAATAAGTTTATCCTTATATTCTTAAGGGTAGAGATGTAATTATAAATCAGAGATTTATAGAGATAAATGCCAACATGAATGATAGAGTCATTAAAATTTATAATTGTGGCTTTGTCTAACTATTTTTAATGTGGTTTTGTGTAACTGTTTTTACTTAATGAGTAAAGTATCTGTGAATGAGCACGGAACCCGAGTCCTAATCTAAGTTTAAAGAATCCATAGCATCTCATTTTTCAAAGCAATACTTACTGGAATGTTATAAAATTAAGCCTGTATTTTTAAAAATGTGATTTATGGAGTGGGGAGATGACTCGTTATTTAAGAACCTTGGTTGACCTTCCGGAGGACTGGTGTTCAGTTCCCAGCATCTATCGTATACAGCTCACCACCACCTATAACTCCAGCTCTAAGAGATCTGACATCCCCTCTAGTTTCCATGGGCACACACCCATGTGCACACACACACAGAGACAGATAAGCATAGACATAAATACAAGTACAAAAAAAGTCTTTTTTGAAAAAGTGACTCATAACTGATACCGCATCTCCTTATTTAAAAAATTAATACCCAAGTGGCTAGGCAGTACTCCACCACGGCAAAAGACATGGCTAATTAGTTGACTTTATTGAAAAATCAACTTAACCACCTATCACACTAATATTCAACTAAAGGTAGATTTAGAAGGAAAAAAAGAAAATGGATATCAATCAGAGAAGTTTTAAAAGTAACTTGGTCACAGAGCTGGATGGCAAGCCCCTGTGGGAAGCAGATAAAAGGACAGAGGTACCGAGGACTGCTGACACTGCACAAAGCATCAGCATACTCGTTAGCAAGGAAGCCTGAGGCTTGTGACAGTGGGGATAACTTAGTCGTCAAACTGTATAAAACTGTATAAAGGCATCTGGCTTCAGCATCTGACGGGAAAGACTCATTTCCCTTCACTCTGGTCAACCTCTTCGTGATGAAAAGGACATGGTCTATGATTACATTTCCTGATTGAGGTTTATGAAAACTCCTGTTTGCCGAGCATCGTGTAAATGTATGTATAATAGCACATGTTTAGCATAAAATAAATCCTAAGCATTTAAGGTTACCCGAGAGGATTTCTCTATAAACCAGAGGGCTTAGATAGAAATGAAATAGGATTTCCACTTAGTTTACAGAATCACCAATTCGATGTTACTAACCTAAGTGGTAGAGCACAAACGAACCGTCTTCTCTCAGTCCAAGTTAGTATGCTTTTATTGTTTCTGGCATGAACTTCATTGGACATCTGTGAAGAACTAAGACACTTTCAGATGAGCGTGGTGACATTATGTTGGGAATTCATTTGGGGGATGACGGGATGCCTAATGTCAAACTAACTGCAAGGTATATATTTTTTCCCCTAATTTTTTCATTAG
Seq C2 exon
GACTTGCAGTCAGTTTCTTCTGGGTCACAGAGAGTTCATTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026705:ENSRNOT00000033268:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.381
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]