GgaINT0108952 @ galGal4
Intron Retention
Gene
ENSGALG00000012890 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr1:57738098-57739510:+
Coord C1 exon
chr1:57738098-57738177
Coord A exon
chr1:57738178-57739465
Coord C2 exon
chr1:57739466-57739510
Length
1288 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATG
5' ss Score
8.73
3' ss Seq
ATCTTTCATCCTCCTATTAGGAT
3' ss Score
9.59
Exon sequences
Seq C1 exon
CCATTCCCTTAGGAATTATAGTTGTACGAGGAGATTGTGACTTGGAGACCTGTCGTATGTATATTGACCGTCTACAAGAG
Seq A exon
GTAATGTTTTTGTGAATTAAGTATCATTTATTAATCTGTATTATGCTTCTTCCACTTCTGAGTGCATAGGTCTAATGATTGCAGTAACTTTGTATTGCAAGTATTGCAGATTGCCTCATGCTGAAAACAAAACTTTAGAGTTATGACATGCTATTAAAACCGAGAGTAACACAAAACATTATTTTCTGAACAGGAAAAAATAAATCATGCTGAAACCATTTAAATTATAGTGGAATTGGTGTGTATTGTTGTGTTTGCTTCTTCCTGAAATTGAACAGAATATAGGCACTTTCCACATTCATTGCTGCATTTATACCAATTTCTGAGCAAATTAGTGTTTAGAAACTGTATTAGGTAGGGATAAATATCATGGTATTTCAGTGGATCTAATTATGCAAATATTATTCTCTAACACAGTCATGGAGTAAACAGAGACTCCAACAAATACTACAAATATCAAACTGATATTTCAAAAAATACAGAAATATATGCTTATCAGATAATGCTAATGTAGCTTTTATCTTCTTGAATGCTTTGCCCCTGGAAGGTATTCCCAGTACAGCCTGGGAAACTGAGAATCCAAATGCCCCACTACCTGAATAATTTTAAATGTGTATGCACTTAGTGATAAAACTGGTGGATTCTCATTGCTAGAGTGCCTCTCACTGTTTCATAAACTTGTACTGATATCTTTCAAAAACATTCACAAGTGTGGTGACTTTACATGGGTTTCCGAGAGCCTGTCCCAGTTGGCACAGGAGCTATGGACCTCATTCTTCCTATTTCCATCTGAGAATGGAGGATTACATCACAATAGTTTGGATGATATTTGCAGCACTGAGATGACCTCCTTGGCATGAGGTTGTCTTCAAATCTGGAAAAATACCAGGGGTCTTCTTTAGTGTTTTAATTACTCAGAAATGCTTGTAAAAGACAATATGAAGGCTTTTAGCTTTTTTCTTTCTTTTTTGCTGCAGATATTATATTCTAAATTTAGATAGTTTTCATGGATCTCTGATATTCAAATAGATCTGTGATACAGTAAAAATTCATTAACATTATCTCTGTATAAATTGTTAAAAGTGGACTGTTTATTTTTTACCAGATGCACATAAATGCAAACTTGAAGAGATCTTTTCCTAAGTATTTTGTGGCGTTTGTATACTATACTTAAAACCAATGAGAACTACTTGCAAAATTACTTTATGATGTTTAGCCAGCCAGAACTGCAATTACTTTTGTTGATTTAATCTTTTCATCATTGGCATATCTTTCATCCTCCTATTAG
Seq C2 exon
GATCTACAGTCAGCAACTTCTACTACACAGAGAGTTCATTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012890:ENSGALT00000021020:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.600
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]