GgaEX6002521 @ galGal4
Exon Skipping
Gene
ENSGALG00000012890 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr1:57738098-57745155:+
Coord C1 exon
chr1:57738098-57738177
Coord A exon
chr1:57739466-57739510
Coord C2 exon
chr1:57745086-57745155
Length
45 bp
Sequences
Splice sites
3' ss Seq
ATCTTTCATCCTCCTATTAGGAT
3' ss Score
9.59
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CCATTCCCTTAGGAATTATAGTTGTACGAGGAGATTGTGACTTGGAGACCTGTCGTATGTATATTGACCGTCTACAAGAG
Seq A exon
GATCTACAGTCAGCAACTTCTACTACACAGAGAGTTCATTACCAG
Seq C2 exon
GACCAAGAAAGCTCTTTCCCAAGAGTACTTTCTGTTCAGAGGCTCTCTCCTAGATGGTGCTTCCTAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012890-'35-27,'35-26,36-27=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.600 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTAGGAATTATAGTTGTACGAGG
R:
GCACCATCTAGGAGAGAGCCT
Band lengths:
135-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]