GgaEX1019501 @ galGal4
Exon Skipping
Gene
ENSGALG00000012890 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr1:57739466-57746658:+
Coord C1 exon
chr1:57739466-57739510
Coord A exon
chr1:57745086-57745155
Coord C2 exon
chr1:57746618-57746658
Length
70 bp
Sequences
Splice sites
3' ss Seq
TGCTTCTCTGCTCAATCCAGGAC
3' ss Score
7.49
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GATCTACAGTCAGCAACTTCTACTACACAGAGAGTTCATTACCAG
Seq A exon
GACCAAGAAAGCTCTTTCCCAAGAGTACTTTCTGTTCAGAGGCTCTCTCCTAGATGGTGCTTCCTAGATG
Seq C2 exon
CAACTTCTGCTGATCGTTTTTACCGCATTGACAGATCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012890_CASSETTE6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTCAGCAACTTCTACTACACA
R:
CTGAGATCTGTCAATGCGGTA
Band lengths:
81-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]