DreEX6006483 @ danRer10
Exon Skipping
Gene
ENSDARG00000014439 | dgkza
Description
diacylglycerol kinase, zeta a [Source:ZFIN;Acc:ZDB-GENE-111104-3]
Coordinates
chr7:38835721-38844941:+
Coord C1 exon
chr7:38835721-38835765
Coord A exon
chr7:38836597-38836666
Coord C2 exon
chr7:38844901-38844941
Length
70 bp
Sequences
Splice sites
3' ss Seq
TTTGTTCTTCACATTCACAGGAA
3' ss Score
8.54
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GACTTTGTGTCGTGTAACCCGTCTCTGCAGCGGCTGGTGCTCCAG
Seq A exon
GAAGGTGACGGGAGCAAATCAAAGGCTTTGTCGTCTCAGAGGCTATCACCGAAATGGTGCTTTCTCGACT
Seq C2 exon
CTACAACTGCTGATCGATTCTACAGGATTGATCGAGCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014439-'32-33,'32-31,33-33=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.167 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTCGTGTAACCCGTCTCT
R:
TGAGCTCGATCAATCCTGTAGA
Band lengths:
80-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]