RnoEX0027564 @ rn6
Exon Skipping
Gene
ENSRNOG00000017737 | Dgkz
Description
diacylglycerol kinase zeta [Source:RGD Symbol;Acc:70929]
Coordinates
chr3:80847747-80848171:-
Coord C1 exon
chr3:80848092-80848171
Coord A exon
chr3:80847930-80847999
Coord C2 exon
chr3:80847747-80847787
Length
70 bp
Sequences
Splice sites
3' ss Seq
CTTTGCTTCTGTATCAACAGGAG
3' ss Score
9.51
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
CTGTGCCTCTGGGTACTGTGGTGGTCCCCGGAGACAGTGACCTAGAGCTCTGCCGAGCCCACATTGAGAGACTCCAGCAG
Seq A exon
GAGCCCGATGGGGCTGGAGCCAAGTCCCCCATGTGCCACCCACTGTCCTCCAAGTGGTGTTTCCTGGACG
Seq C2 exon
CCACCACTGCCAGCCGCTTCTACAGGATCGACAGGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017737-'45-53,'45-50,46-53
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.417 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCCTCTGGGTACTGTGG
R:
GGGCCCTGTCGATCCTGTAG
Band lengths:
119-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]