GgaEX6037742 @ galGal3
Exon Skipping
Gene
ENSGALG00000008380 | DGKZ
Description
NA
Coordinates
chr5:25813182-25816016:-
Coord C1 exon
chr5:25815937-25816016
Coord A exon
chr5:25814571-25814640
Coord C2 exon
chr5:25813182-25813222
Length
70 bp
Sequences
Splice sites
3' ss Seq
ATTCTCTTTTTTCTATACAGGAA
3' ss Score
10.88
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
CTGTGCCGCTGGGGATCATCGTGGTTCCAGGGGACAGTGACCTGGAGTTGTGCCGGACCCAAATTGAGAGGCTGCAGGAG
Seq A exon
GAAGGAGATGGAGCCAAACCGAAGACATTGTCATCCCAGAAACTGTCACCAAAATGGTGTTTCCTGGACT
Seq C2 exon
CAACCACAGCAGATCGGTTCTACAGGATAGATCGTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008380-'25-26,'25-25,27-26=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=0.354 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCCGCTGGGGATCAT
R:
GTGCACGATCTATCCTGTAGAACC
Band lengths:
119-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]