DreEX6100905 @ danRer10
Exon Skipping
Gene
ENSDARG00000076025 | dgkzb
Description
diacylglycerol kinase, zeta b [Source:ZFIN;Acc:ZDB-GENE-111104-4]
Coordinates
chr25:7720552-7726262:+
Coord C1 exon
chr25:7720552-7720631
Coord A exon
chr25:7724616-7724685
Coord C2 exon
chr25:7726222-7726262
Length
70 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTCTCTGCCTCTAGGAG
3' ss Score
13.21
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
CGATTCCCATGGGGATAATTACAGTTCCTGGGAACAGTGATTTGGAGACGTGTCGGCAGCATATCGAGAGGTTGCATGAG
Seq A exon
GAGGGGGATGGGATGAATACAGACACACTGCACATGCCAAAGCTTTCACCAAAATGGTGCTTCCTGGACT
Seq C2 exon
GTACAACTGCAGATCGTTTCTACCGAATAGATCGTGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076025-'25-30,'25-29,27-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.370 A=0.417 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGGGGATAATTACAGTTCCTGG
R:
TATTCGGTAGAAACGATCTGCAGT
Band lengths:
103-173
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]