GgaEX6037742 @ galGal4
Exon Skipping
Gene
ENSGALG00000008380 | DGKZ
Description
diacylglycerol kinase zeta [Source:RefSeq peptide;Acc:NP_001026363]
Coordinates
chr5:22957759-22960593:-
Coord C1 exon
chr5:22960514-22960593
Coord A exon
chr5:22959148-22959217
Coord C2 exon
chr5:22957759-22957799
Length
70 bp
Sequences
Splice sites
3' ss Seq
ATTCTCTTTTTTCTATACAGGAA
3' ss Score
10.88
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
CTGTGCCGCTGGGGATCATCGTGGTTCCAGGGGACAGTGACCTGGAGTTGTGCCGGACCCAAATTGAGAGGCTGCAGGAG
Seq A exon
GAAGGAGATGGAGCCAAACCGAAGACATTGTCATCCCAGAAACTGTCACCAAAATGGTGTTTCCTGGACT
Seq C2 exon
CAACCACAGCAGATCGGTTCTACAGGATAGATCGTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008380-'37-41,'37-36,39-41=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.148 A=0.292 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCCGCTGGGGATCAT
R:
GTGCACGATCTATCCTGTAGAACC
Band lengths:
119-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]