BtaEX6060534 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013636 | DGKZ
Description
diacylglycerol kinase, zeta [Source:HGNC Symbol;Acc:HGNC:2857]
Coordinates
chr15:77245294-77245690:+
Coord C1 exon
chr15:77245294-77245373
Coord A exon
chr15:77245463-77245532
Coord C2 exon
chr15:77245650-77245690
Length
70 bp
Sequences
Splice sites
3' ss Seq
GCCTCTGCCTCTCTTGCCAGGAG
3' ss Score
10.5
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
CTGTGCCGCTGGGCACTGTGGTGGTCCCAGGAGACAGCGACCTGGAGCTGTGCCGCGCTCACATCGAGAGGCTCCGGCAG
Seq A exon
GAGCCCGAAGGTGCTGGAGCCAAGTCCCCGATGTGCCAGAAACTGTCCCCCAAGTGGTGCTTCCTCGATG
Seq C2 exon
CCACCACTGCCAGCCGCTTCTACAGAATCGACAGGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013636-'33-37,'33-35,34-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=0.375 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGCACTGTGGTGGTC
R:
GGGCCCTGTCGATTCTGTAGA
Band lengths:
111-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]