MmuEX6103064 @ mm10
Exon Skipping
Gene
ENSMUSG00000040479 | Dgkz
Description
diacylglycerol kinase zeta [Source:MGI Symbol;Acc:MGI:1278339]
Coordinates
chr2:91936525-91936937:-
Coord C1 exon
chr2:91936858-91936937
Coord A exon
chr2:91936702-91936771
Coord C2 exon
chr2:91936525-91936565
Length
70 bp
Sequences
Splice sites
3' ss Seq
CTTTGCTTCTGTCTCAGCAGGAG
3' ss Score
8.56
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
CTGTGCCTCTGGGCACTGTGGTGGTCCCCGGAGACAGTGACCTGGAGCTCTGCCGCGCCCACATTGAGAGACTGCAGCGG
Seq A exon
GAGCCCGATGGGGCTGGAGCCAAGTCCCCGATGTGCCACCAACTCTCCTCCAAGTGGTGTTTCCTGGATG
Seq C2 exon
CCACCACTGCCAGCCGCTTCTACAGGATCGACAGAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040479-'50-74,'50-73,51-74=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.278 A=0.375 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGGGCACTGTGGTGGTC
R:
TGGGCTCTGTCGATCCTGTAG
Band lengths:
114-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types