RnoEX0027519 @ rn6
Exon Skipping
Gene
ENSRNOG00000026705 | Dgki
Description
diacylglycerol kinase, iota [Source:RGD Symbol;Acc:735049]
Coordinates
chr4:64454430-64472396:-
Coord C1 exon
chr4:64472352-64472396
Coord A exon
chr4:64457609-64457678
Coord C2 exon
chr4:64454430-64454470
Length
70 bp
Sequences
Splice sites
3' ss Seq
ACATTTGTATCTCTTTCTAGGAC
3' ss Score
12.43
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GACTTGCAGTCAGTTTCTTCTGGGTCACAGAGAGTTCATTACCAG
Seq A exon
GACCAAGAAACTTCCTTCCCCAGGGCGATCTCAGCTCAGAGGCTGTCCCCACGGTGGTGCTTCCTAGACG
Seq C2 exon
CAACTTCTGCTGACCGCTTTTATCGAATAGACAGATCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026705-'40-41,'40-40,42-41
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.381 A=0.076 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000033268fB4096
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGCAGTCAGTTTCTTCTGGG
R:
TCTGTCTATTCGATAAAAGCGGTCA
Band lengths:
79-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]