MmuEX6003730 @ mm10
Exon Skipping
Gene
ENSMUSG00000038665 | Dgki
Description
diacylglycerol kinase, iota [Source:MGI Symbol;Acc:MGI:2443430]
Coordinates
chr6:36916421-36934681:-
Coord C1 exon
chr6:36934637-36934681
Coord A exon
chr6:36920354-36920423
Coord C2 exon
chr6:36916421-36916461
Length
70 bp
Sequences
Splice sites
3' ss Seq
ATGTGTATATCTCTTTCTAGGAC
3' ss Score
10.9
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GACTTGCAGTCAGTTTCTTCTGGGTCACAGAGAGTTCATTACCAG
Seq A exon
GACCAAGAAACCTCCTTCCCCAGGGCACTCTCAGCTCAGAGGCTGTCCCCACGGTGGTGCTTCCTAGATG
Seq C2 exon
CAACGTCTGCTGACCGCTTTTATCGAATAGACAGATCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038665-'53-50,'53-49,54-50
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=0.062 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGCAGTCAGTTTCTTCTGGG
R:
TCTGTCTATTCGATAAAAGCGGTCA
Band lengths:
79-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types