BtaEX0011202 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019980 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr4:101948364-101959986:-
Coord C1 exon
chr4:101959942-101959986
Coord A exon
chr4:101950941-101951010
Coord C2 exon
chr4:101948364-101948404
Length
70 bp
Sequences
Splice sites
3' ss Seq
ATGTGTGTGTGTCTTTCCAGGAC
3' ss Score
12.08
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GACCTGCAGTCAGTTTCTTCTGGCTCCCAGAGAGTTCATTACCAG
Seq A exon
GACCACGAAACCTCCTTCCCTAGGGCGCTCTCAGCTCAGAGACTCTCCCCACGGTGGTGCTTTCTAGATG
Seq C2 exon
CTACTTCTGCTGATCGCTTTTATCGAATAGACAGATCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019980-'31-31,'31-30,32-31
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=0.021 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCAGTTTCTTCTGGCTCCC
R:
TGAGATCTGTCTATTCGATAAAAGCG
Band lengths:
79-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development