DreEX6000525 @ danRer10
Exon Skipping
Gene
ENSDARG00000063578 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr4:4615439-4617693:-
Coord C1 exon
chr4:4617649-4617693
Coord A exon
chr4:4616421-4616490
Coord C2 exon
chr4:4615439-4615479
Length
70 bp
Sequences
Splice sites
3' ss Seq
TTTTGTGTGTGTTTTCTCAGGAT
3' ss Score
10.54
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GATTTGCATCAGGCGCCCTCTGCTGGCCACCGAGTGCACTATCAG
Seq A exon
GATGAGTGTGCAGGTTTGCCACGGCCGAGTTCAGCACACAGACTTTCAGCCAACTGGAGCTTCCTGGACT
Seq C2 exon
CTACATCAGCTGATCGCTTTTATCGCATCGACAAGGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063578-'28-33,'28-32,29-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.467 A=0.083 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGGCGCCCTCTGCTG
R:
CTGAGCCTTGTCGATGCGATA
Band lengths:
79-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]