BtaEX0011204 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019980 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr4:101950941-101962365:-
Coord C1 exon
chr4:101962286-101962365
Coord A exon
chr4:101959942-101959986
Coord C2 exon
chr4:101950941-101951010
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTTTTCCATTTTCTCATTAGGAC
3' ss Score
10.36
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
CCATCCCACTGGGCATTCTAGTTGTGCGTGGAGACTGTGATTTGGAGACTTGCCGTATGTACATAGATCGCCTGCAGGAG
Seq A exon
GACCTGCAGTCAGTTTCTTCTGGCTCCCAGAGAGTTCATTACCAG
Seq C2 exon
GACCACGAAACCTCCTTCCCTAGGGCGCTCTCAGCTCAGAGACTCTCCCCACGGTGGTGCTTTCTAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019980_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.400 C2=0.021
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGCATTCTAGTTGTGCGT
R:
ATCTAGAAAGCACCACCGTGG
Band lengths:
141-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development