DreEX0003576 @ danRer10
Exon Skipping
Gene
ENSDARG00000063578 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr4:4616421-4618048:-
Coord C1 exon
chr4:4617969-4618048
Coord A exon
chr4:4617649-4617693
Coord C2 exon
chr4:4616421-4616490
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTATGTTGTGTTTTGGTCAGGAT
3' ss Score
6.6
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
CGACTGCTGTTGGCATCGTGGTGGTGAGAGGAGACTGTGACCTCGAAACCTGTCGACTCTACATTGATAGACTGCAGGAG
Seq A exon
GATTTGCATCAGGCGCCCTCTGCTGGCCACCGAGTGCACTATCAG
Seq C2 exon
GATGAGTGTGCAGGTTTGCCACGGCCGAGTTCAGCACACAGACTTTCAGCCAACTGGAGCTTCCTGGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063578_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.467 C2=0.083
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGGTGAGAGGAGACTGTG
R:
AGTCCAGGAAGCTCCAGTTGG
Band lengths:
132-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]