RnoEX0027517 @ rn6
Exon Skipping
Gene
ENSRNOG00000026705 | Dgki
Description
diacylglycerol kinase, iota [Source:RGD Symbol;Acc:735049]
Coordinates
chr4:64457609-64474930:-
Coord C1 exon
chr4:64474851-64474930
Coord A exon
chr4:64472352-64472396
Coord C2 exon
chr4:64457609-64457678
Length
45 bp
Sequences
Splice sites
3' ss Seq
TCCCCTAATTTTTTCATTAGGAC
3' ss Score
8.75
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
CCATCCCCCTGGGTATTCTAGTTGTTCGTGGAGACTGTGATTTGGAGACTTGCCGTATGTACATAGACCGCCTGCAGGAG
Seq A exon
GACTTGCAGTCAGTTTCTTCTGGGTCACAGAGAGTTCATTACCAG
Seq C2 exon
GACCAAGAAACTTCCTTCCCCAGGGCGATCTCAGCTCAGAGGCTGTCCCCACGGTGGTGCTTCCTAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026705-'38-40,'38-38,40-40
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.381 C2=0.076
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000033268fB4098
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCCCCCTGGGTATTCTAGT
R:
TCTAGGAAGCACCACCGTGG
Band lengths:
148-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]