HsaEX0019457 @ hg19
Exon Skipping
Gene
ENSG00000157680 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:2855]
Coordinates
chr7:137154296-137172435:-
Coord C1 exon
chr7:137172356-137172435
Coord A exon
chr7:137170120-137170164
Coord C2 exon
chr7:137154296-137154365
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCATTTTCTCATTAGGAC
3' ss Score
10
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
CGATACCTCTGGGTATTCTAGTTGTGCGTGGAGACTGTGATTTGGAGACTTGCCGTATGTACATAGACCGCCTACAGGAG
Seq A exon
GACCTACAGTCAGTTTCTTCTGGCTCCCAGAGAGTTCATTACCAG
Seq C2 exon
GACCATGAAACCTCCTTCCCCAGGGCTCTCTCAGCACAGAGGCTCTCTCCTCGGTGGTGCTTCCTAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157680_MULTIEX3-5/7=4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.333 C2=0.010
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGTTGTGCGTGGAGACTGT
R:
ATCTAGGAAGCACCACCGAGG
Band lengths:
132-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)