HsaEX0019457 @ hg38
Exon Skipping
Gene
ENSG00000157680 | DGKI
Description
diacylglycerol kinase iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr7:137469550-137521966:-
Coord C1 exon
chr7:137521866-137521966
Coord A exon
chr7:137485374-137485418
Coord C2 exon
chr7:137469550-137469619
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCATTTTCTCATTAGGAC
3' ss Score
10
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
TCCCCAGTCTGTCCCAGATCGTCTGAGGATCCGGGTGAACAAAATCAGTTTACAAGACTATGAAGGATTCCACTATGACAAGGAGAAACTCCGAGAAGCTT
Seq A exon
GACCTACAGTCAGTTTCTTCTGGCTCCCAGAGAGTTCATTACCAG
Seq C2 exon
GACCATGAAACCTCCTTCCCCAGGGCTCTCTCAGCACAGAGGCTCTCTCCTCGGTGGTGCTTCCTAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157680_MULTIEX2-3/4=C1-4
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=0.276 C2=0.006
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTCTGTCCCAGATCGTCT
R:
AGAGCCTCTGTGCTGAGAGAG
Band lengths:
144-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development