MmuEX0014438 @ mm10
Exon Skipping
Gene
ENSMUSG00000038665 | Dgki
Description
diacylglycerol kinase, iota [Source:MGI Symbol;Acc:MGI:2443430]
Coordinates
chr6:36920354-36937400:-
Coord C1 exon
chr6:36937321-36937400
Coord A exon
chr6:36934637-36934681
Coord C2 exon
chr6:36920354-36920423
Length
45 bp
Sequences
Splice sites
3' ss Seq
CCCCCTTATTTTTTCATTAGGAC
3' ss Score
10
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
CCATCCCTCTGGGTATTCTAGTTGTTCGTGGAGACTGTGATTTGGAGACTTGCCGTATGTACATAGACCGTCTACAGGAG
Seq A exon
GACTTGCAGTCAGTTTCTTCTGGGTCACAGAGAGTTCATTACCAG
Seq C2 exon
GACCAAGAAACCTCCTTCCCCAGGGCACTCTCAGCTCAGAGGCTGTCCCCACGGTGGTGCTTCCTAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038665_MULTIEX1-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.400 C2=0.062
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGTTGTTCGTGGAGACTGTGA
R:
CATCTAGGAAGCACCACCGTG
Band lengths:
132-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types