HsaINT0047406 @ hg19
Intron Retention
Gene
ENSG00000149091 | DGKZ
Description
diacylglycerol kinase, zeta [Source:HGNC Symbol;Acc:2857]
Coordinates
chr11:46393625-46394060:+
Coord C1 exon
chr11:46393625-46393720
Coord A exon
chr11:46393721-46393977
Coord C2 exon
chr11:46393978-46394060
Length
257 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
3' ss Seq
TGGCTCCCCATCCCATCCAGGGT
3' ss Score
6.96
Exon sequences
Seq C1 exon
GAGGGCCGCTGGAGACCCTTCATCATCAGGCCCACCCCCTCCCCGCTCATGAAGCCCCTGCTGGTGTTTGTGAACCCCAAGAGTGGGGGCAACCAG
Seq A exon
GTGAACGCGGCCTTGCCTCTCAGCTAAGGGCTCGGGCGGGGGTTGGGGTCCAGCCCGTCTGCCAGCAGCTGTTCCCAGAGCCCGTTTCTGGCTTCTACCCCAATCCCTCTTTCCCAGGGATCCTGAGAAAATCCTGTCCTTTCTCCACCCCTCACCCCTTATTGGCCCTGGTTCCCACAGTCACACCCCTCTCCCTCTGCTGCTCCCACTTCGTCCCACCACTGCCTGACTGTCTCTTGGCTCCCCATCCCATCCAG
Seq C2 exon
GGTGCAAAGATCATCCAGTCTTTCCTCTGGTATCTCAATCCCCGACAAGTCTTCGACCTGAGCCAGGGAGGGCCCAAGGAGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000149091-DGKZ:NM_003646:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.156 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078119=DAGK_cat=PU(10.4=40.6)
A:
NA
C2:
PF0078119=DAGK_cat=FE(21.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGGAGACCCTTCATCATC
R:
CCTGGCTCAGGTCGAAGA
Band lengths:
157-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)