DreINT0056535 @ danRer10
Intron Retention
Gene
ENSDARG00000014439 | dgkza
Description
diacylglycerol kinase, zeta a [Source:ZFIN;Acc:ZDB-GENE-111104-3]
Coordinates
chr7:38818391-38818665:+
Coord C1 exon
chr7:38818391-38818486
Coord A exon
chr7:38818487-38818582
Coord C2 exon
chr7:38818583-38818665
Length
96 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTG
5' ss Score
8.35
3' ss Seq
TTCTGCTCTCTTTGTCTTAGGGA
3' ss Score
10.64
Exon sequences
Seq C1 exon
GAGGCACGATGGAAGCCTTTTATAGTGAGACCCATTCCCTCCCAACTCATGAAGCCACTGCTAGTGTTTGTAAATCCAAAGAGTGGAGGAAACCAG
Seq A exon
GTATTGTTGTTACTTTGTATAGTAAAAACAGAAATAACATATTACAAATATTAATAACCTATAATGTCTATTTCCATTCTGCTCTCTTTGTCTTAG
Seq C2 exon
GGAGCTAAAATCATCCAGACCTTTCTTTGGTATCTAAACCCTCGGCAGGTGTTTGATCTAAGTCAAGGAGGTCCTCAGGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014439:ENSDART00000093009:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078119=DAGK_cat=PU(10.4=40.6)
A:
NA
C2:
PF0078119=DAGK_cat=FE(21.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCACGATGGAAGCCTTTT
R:
AGGACCTCCTTGACTTAGATCA
Band lengths:
171-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]