GgaINT0054689 @ galGal3
Intron Retention
Gene
ENSGALG00000008380 | DGKZ
Description
NA
Coordinates
chr5:25820429-25820864:-
Coord C1 exon
chr5:25820769-25820864
Coord A exon
chr5:25820512-25820768
Coord C2 exon
chr5:25820429-25820511
Length
257 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
AATCTTTCTTATCCCCCTAGGGA
3' ss Score
10.57
Exon sequences
Seq C1 exon
GAAGGGAGGTGGAAACCTTTTGTCATCAAGCCCATGCCAGCTCCTCTCATGAAGCCCTTGCTCGTGTTTGTGAACCCCAAGAGTGGTGGGAATCAG
Seq A exon
GTATGGCCTTGCCCTTCATCTCCCTGAGAAGGCACCTCTTTGCCATTTGGCTACTGAGAGCTCAGAACAGGTTTGGTAATGTCTCAGCTGCAAAAGAGACAAGAAACCTTTGCTGTCAGTTTGCTTCCAGTGCTGCCCTCTTAACCCAGACTTTGCCTGAGTACCCCAGAACACCGCCGTGTTGACCTGTCACCAGGCTTTCTCCCCTCTGTTCATGAAGAACTACCTGTTACCTGAAATCTTTCTTATCCCCCTAG
Seq C2 exon
GGAGCCAAGATAATCCAGTCCTTCATGTGGTATCTCAACCCACGGCAAGTTTTTGACCTCAGCCAGGGTGGTCCCAAGGAGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008380:ENSGALT00000038374:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078119=DAGK_cat=PU(10.4=40.6)
A:
NA
C2:
PF0078119=DAGK_cat=FE(21.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGAGGTGGAAACCTTTTGT
R:
CACCCTGGCTGAGGTCAAAAA
Band lengths:
164-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]