RnoINT0047092 @ rn6
Intron Retention
Gene
ENSRNOG00000017737 | Dgkz
Description
diacylglycerol kinase zeta [Source:RGD Symbol;Acc:70929]
Coordinates
chr3:80851091-80851516:-
Coord C1 exon
chr3:80851421-80851516
Coord A exon
chr3:80851174-80851420
Coord C2 exon
chr3:80851091-80851173
Length
247 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TCCCTTGGCTGTCCCTGCAGGGC
3' ss Score
10.63
Exon sequences
Seq C1 exon
GAAGGCCGCTGGAGACCCTTCATCATCAGGCCCACCCCGTCCCCCCTCATGAAGCCCCTGCTAGTGTTTGTAAACCCCAAGAGTGGGGGTAACCAG
Seq A exon
GTAAGCACAAACTTTCTGCTCACCGAGAGCCACACATGAGAAGGTGGTGGGTGTTACACCCACCTGCCCGTAATTGTTTTCAGCAACAGTTTATAGCTTTAGCCCCTACCTTGCTTATCTAGGGACCCTGAGAAGACCCTGTCCCATCCCAGCCTTTACTGTATCTGGCTTCCACAGCTGTGTTCCTCTGTTACCTCTGCTAGCTCTTCACCTCAGTCCCCTCATTGTCCCTTGGCTGTCCCTGCAG
Seq C2 exon
GGCGCTAAGATCATCCAGTCTTTTCTGTGGTATCTGAACCCCCGGCAAGTCTTCGATCTGAGCCAGGGAGGACCCAGGGAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017737:ENSRNOT00000024280:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.156 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078119=DAGK_cat=PU(10.4=40.6)
A:
NA
C2:
PF0078119=DAGK_cat=FE(21.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGGAGACCCTTCATCATC
R:
GGTCCTCCCTGGCTCAGATC
Band lengths:
164-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]