HsaINT0047424 @ hg19
Intron Retention
Gene
ENSG00000149091 | DGKZ
Description
diacylglycerol kinase, zeta [Source:HGNC Symbol;Acc:2857]
Coordinates
chr11:46400007-46400661:+
Coord C1 exon
chr11:46400007-46400050
Coord A exon
chr11:46400051-46400540
Coord C2 exon
chr11:46400541-46400661
Length
490 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTA
5' ss Score
7.52
3' ss Seq
GCCATGCCTCCTGCCCTCAGCTC
3' ss Score
8.4
Exon sequences
Seq C1 exon
GTGAAGAGCTGATTGAGGCTGCCAAGAGGAACGACTTCTGTAAG
Seq A exon
GTACTAGCTCCAGGCTCCAGTTCCTTCCCCCAGCAGCTCCCTCGGGCCCTGGGGAGCGAGGCCTCTGGGTTGGGCCAAGAGCTGACCTGCTCAGGTGCTGTCATCTGTCATCGTCTGGCCCTCTGTGGGATCTCCAGTGATCGTCCCATTCCACTTCACTGTATCTCTGTCTAGGCCACAATAGATGGCTCCTAGTAGGGGCTTCCTAGCTCAGTCCACCTGTCCCTGGTGCTTAGAAAGGAGCAGGTCAGAGGAAGCACTGCTCCAGGGCTTGGTCACCAGTGCTGCCAGAGAGCCCACAGGCTGTGGGGTGAGAGGCCCCTCCTCCGGTGTGCTCCAGAGAGACCCACAGAGGCAACTCAGGAGTAAGATGTGTGAGCGCACTCGTTTCAGGCCTGTGCTGGTGTACCCGGCTGTGGGCCAGCGTGTGAGCTCAGGGAAGGAGGGGTGGCCCCAGGAGGTCCAGCCCTGCCATGCCTCCTGCCCTCAG
Seq C2 exon
CTCCAGGAGCTGCACCGAGCTGGGGGCGACCTCATGCACCGAGACGAGCAGAGTCGCACGCTCCTGCACCACGCAGTCAGCACTGGCAGCAAGGATGTGGTCCGCTACCTGCTGGACCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000149091-DGKZ:NM_003646:27
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.342 A=NA C2=0.463
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF138571=Ank_5=PU(72.5=90.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)