GgaINT0054706 @ galGal3
Intron Retention
Gene
ENSGALG00000008380 | DGKZ
Description
NA
Coordinates
chr5:25810803-25811145:-
Coord C1 exon
chr5:25811105-25811145
Coord A exon
chr5:25810924-25811104
Coord C2 exon
chr5:25810803-25810923
Length
181 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
CCTCTCTGGCAATCCCATAGTTC
3' ss Score
4.61
Exon sequences
Seq C1 exon
ATGACCTGATAGAAGCTGCCAAGACTGGTAACTTCAGCAAG
Seq A exon
GTAGGCACTTCAGCTTTGTGCTTTGGCATGCCACTGCCCTTCAGTGGCTCCTGGTGAGGCCTCTCTTCACCAGCTGCCCAACCAGGAGCAGAGGGTGAAAACCTCAGGGATGCGGTGCCGGGGCTTGGGGAGTTACACATGAGCACTGAAACTCATCTGGACCTCTCTGGCAATCCCATAG
Seq C2 exon
TTCCAAGAGCTGCACCGAGCTGGAAGAGACCTGATGGTGCGAGACTCCTCTGGCCGAACTGTCCTCCACCATGCTGTCGTATCAGGGAGCAAGGACATCGTCAAATACATAATTGAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008380:ENSGALT00000038374:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.146
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(17.8=100)
A:
NA
C2:
PF127962=Ank_2=FE(58.0=100),PF127962=Ank_2=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACCTGATAGAAGCTGCCA
R:
ATTATGTATTTGACGATGTCCTTGCT
Band lengths:
154-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]