RnoINT0047110 @ rn6
Intron Retention
Gene
ENSRNOG00000017737 | Dgkz
Description
diacylglycerol kinase zeta [Source:RGD Symbol;Acc:70929]
Coordinates
chr3:80845338-80846108:-
Coord C1 exon
chr3:80846065-80846108
Coord A exon
chr3:80845459-80846064
Coord C2 exon
chr3:80845338-80845458
Length
606 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTA
5' ss Score
7.52
3' ss Seq
GCTCTGCCCATCGCTCTCAGCTC
3' ss Score
6.38
Exon sequences
Seq C1 exon
GTGAAGAGCTGATTGAAGCTGCCAAGAGGAATGACTTCTGCAAG
Seq A exon
GTACTAACTAGTCAGAGCCTGCCTTGCCCCGGGAGCCCCTCGCCCTGGGAGGGATTGGGCCCTTGTCATCTGTCATCAGCTGGTCCTTCTGAATAGGGGCTGCTTCATCCAGCATCCCTGTCCCTTGTTGTTCTCTTTTTTCTTTTTCTTTTTCTTTTTTTTTTTTTTTCAGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCCTGTCCCTTGTTCTTGAAAGGGGGTCAGTCTTAAAGGAAATAGGGGCTCCATGGCTTGGTTGGCTGAGCATTGGGGAGTTCCTCACTCATAGGATGACAGAAGACTTGTGTCTAATGACACTCAGACACCCTCAGAAGCCAGGTGTGGTGGCACACCTTTAATCTCAGAAGGCAGAAGCAGTAGGGTCTCTGTGAGTTTGAGGCCAACCTTGTCTACAACCAAGATACCATAGAAAGACCAAAAAAAAAAAAAAAAAAAAAAAGCCTCAGAAGTGCCCAGGGAGTGACGGGCCAGCCCCTGTGCCTGGGTCCATGCCTGTGAGGTGTGGGAGATCCAGCCCTGCTCTGCCCATCGCTCTCAG
Seq C2 exon
CTCCAGGAACTACACCGAGCAGGAGGTGACCTCATGCACCGCGACCATCAGAGCCGCACACTCCTGCACCACGCAGTCAGCACTGGCAGTAAGGAAGTGGTCCGCTATCTGCTCGATCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017737:ENSRNOT00000024280:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.463
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF138571=Ank_5=PU(7.0=9.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]