HsaINT1010980 @ hg38
Intron Retention
Gene
ENSG00000149091 | DGKZ
Description
diacylglycerol kinase zeta [Source:HGNC Symbol;Acc:HGNC:2857]
Coordinates
chr11:46378457-46379111:+
Coord C1 exon
chr11:46378457-46378500
Coord A exon
chr11:46378501-46378990
Coord C2 exon
chr11:46378991-46379111
Length
490 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTA
5' ss Score
7.52
3' ss Seq
GCCATGCCTCCTGCCCTCAGCTC
3' ss Score
8.4
Exon sequences
Seq C1 exon
GTGAAGAGCTGATTGAGGCTGCCAAGAGGAACGACTTCTGTAAG
Seq A exon
GTACTAGCTCCAGGCTCCAGTTCCTTCCCCCAGCAGCTCCCTCGGGCCCTGGGGAGCGAGGCCTCTGGGTTGGGCCAAGAGCTGACCTGCTCAGGTGCTGTCATCTGTCATCGTCTGGCCCTCTGTGGGATCTCCAGTGATCGTCCCATTCCACTTCACTGTATCTCTGTCTAGGCCACAATAGATGGCTCCTAGTAGGGGCTTCCTAGCTCAGTCCACCTGTCCCTGGTGCTTAGAAAGGAGCAGGTCAGAGGAAGCACTGCTCCAGGGCTTGGTCACCAGTGCTGCCAGAGAGCCCACAGGCTGTGGGGTGAGAGGCCCCTCCTCCGGTGTGCTCCAGAGAGACCCACAGAGGCAACTCAGGAGTAAGATGTGTGAGCGCACTCGTTTCAGGCCTGTGCTGGTGTACCCGGCTGTGGGCCAGCGTGTGAGCTCAGGGAAGGAGGGGTGGCCCCAGGAGGTCCAGCCCTGCCATGCCTCCTGCCCTCAG
Seq C2 exon
CTCCAGGAGCTGCACCGAGCTGGGGGCGACCTCATGCACCGAGACGAGCAGAGTCGCACGCTCCTGCACCACGCAGTCAGCACTGGCAGCAAGGATGTGGTCCGCTACCTGCTGGACCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000149091:ENST00000343674:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=NA C2=0.466
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF138571=Ank_5=PU(72.5=90.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains