DreINT0056556 @ danRer10
Intron Retention
Gene
ENSDARG00000014439 | dgkza
Description
diacylglycerol kinase, zeta a [Source:ZFIN;Acc:ZDB-GENE-111104-3]
Coordinates
chr7:38868992-38871797:+
Coord C1 exon
chr7:38868992-38869041
Coord A exon
chr7:38869042-38871676
Coord C2 exon
chr7:38871677-38871797
Length
2635 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TAACTGCATTTTCTGTGCAGTTG
3' ss Score
7.02
Exon sequences
Seq C1 exon
TGTCAGTGGACAGTCTAATTGAATGTGTGAAAAAGAAGGACCATCAGAAG
Seq A exon
GTAAGAGCATCATTTCAATACATTAAGCACATAAATACAGCAGCCTCACTCTTTCTTCTTACAAGTTTCACAAACTTCAGTGTTGACTAGTTTGCAAGAACATGCAGATATTATTCGAGTAGACCGCTCAGATGCTGTGTTTTACACTGATTTAATATGCAAGAGAGCAGCCTGTGTGCTTTTAGTTAAATGTTCACTCGGCCTAAAGGATATTCTGTCGTCTGTAACACAGGACTGACCTCACCATTAAATGTCAAGTATCTTGCAGAGCGGAGGCGGATCCAGATAAATGATCCTGCATATTCTCTTGACCTTTCACTCGCTCTGGGTTTCTATGGTGACCAAACAGACTTTCTCCAGACTGATAATCTCTCACGCCCAGACCCAAACATGTTCCCACTCCTGGAACACCTCAGAAGAGGAAAGAATTTCAAATATTTCAAATATTAATGAGAATTGTTGACTTGCTGCAAAATGGCTGTGATGCACCCGGCATCCTTTACCTGGCCCAGTGTGTCGTCTTTAAAGCATTTTAGTGCTCCTACAGCCTGAACATTAGAGCAGTAAACAGCCTCTCTGACATTTAAAGTCGCATGAAAGATGCAGAACTTCCTTCAGGCCACGTTTATATCAGTACTTTTTTATTTTTGCACAGCATTATAAAATAGAATTGATGGAAAGGAATAGTGGTGTTTTTAAAAAAAAAAAAAAAAAAAAAAAAGCTTTCCATCCACACTGCACTGATGGCCCTATCAAAATTGTACCCTATTTGAGCTTTTTAAATAAACCACTAATTAGTAACATTCATTATAACAACTAGTAATAAATTGCATTGGAAGAAATAAATGTGACATTTAAGTTAGCTAAAAATGCTTTAAATGTTACCAGTATTTAGGAGATTACAAGATATAACTATAATTATACACTCAAAAAAGTTTTTTTTATTTAAACTTAGCTGAAACAAAAGTTTTTTTGGGGACCACTTAATTGTTTTATGTTCAATTAACTTAAATTAGTCAAATCTAATGAATTAACTTAATTTCTTTGTTGTGTCAACAGTGTGGATGCCAGCATTTTTTACAGTGTAGTACAAAACTACATATACAATTATTACAAAAAACACAAATCACTGTACAACAGGAAATACTATAGAATGATCCAGAAGAACCAATCAGGAGCTGTGTCCAAAATGGCACATTATACACTACTTATTCACTTAGTATATGATAATATATAATTGCAGTGTCGTCCCAAATAAAACGCTGACCCTTTTTTACTAACCACAAATTCAGACCGTTTCCCAGATGTTTGACGCTTACTAAAATACTACAACAAATGACCAATACCTGCCATAAGTATAACCGCATTTACCATCGGGAAGCAGCATAATCACTCATGTAGGAGAATTTTGCTTTCACAATCTAAAATAAATAAATTAATCAAATGTCAGCGCCTGATAGCTCCGCCCCTTCTGCTACATCAGCAAAACTGCAGGCGTTGAGTGTGTGAAGTGTCCATCATTCCAGACTTCTTTTAACAGTTAAATAAGTGCATCATCCGGGTATTTAAAGTACACTTATTCTTTTAGAATAAAAGGATATTTCAGTGTGAATGCACTACTTAAATGTGACCAGACATGCCTTTTTTTATTTATTTATTTATTTATTTTTTTTTAGTTTTGGTTAAGTTTTCAATTTAAAAAAGGGTCTGCAGTGCTTGCAGTACTCATGCACCTATACACTTGACCATGCAGTGTTTTAGTTTTGTGTAATTTCAAATGCAACCCTAACATTGCAGAGTTTCCAAGACAACGCTTAACAGTTACTAAATTAGAAAAATAAATCACCAAACAAACAAATAGTGCTAGGTATGTGTGCAACTGCATTTACCGTATGGAGGTGGTATAATCGTTTACTTAATACTTATATTATCCGGGTATTTAATGTGCACTAATTATTTGGAGAATTTTAGTTGTGAACGCACCACTTACACAATTTATAGTGCAAAAAGCATATAACAGTGTACAAGAATACGATTTAGTGTATAAGTATGCAATTTGGGTGCAAAGTAGGATGCTAGACATAATTGTAGCCAAGTTGTGCCATTTAAGAGAAAAGCTCAGTAGTTTAAACTTAACTTTGCTCACTGTCTGGTGTTTGGTGTATTCTTTTTCCTCTCGGTGGATTCCTCATCTGAAATCTCCTCCAAAATGAGACTCAAAGCTGGTGAATAAAACACCTTTGATGATATCACTGTGACTCACTGGACTGGTGATAATGCCAGTATTTTAATGTCCAAACTCTCTGTGGTGTATAAAAGAGTCTTGGCAATTTTCTGACAGATTTTTGGGCTTTATCGCACTGAAGGGTTTTTTGAACCCATTGAGATGGTCACTGGCATGTTTGCTATCAGCTTTCAGCCAAACGTGTGCTTTTTCTTAAGCACAGCTGAGCCCATGACTAGATTCTGATTCAATAACTGTGAAAACCAATCCTTTTGGCCATTTTTCAATAGTTAATAAGACTTGGTGTTCAGGATAGCATGTGGCTTCCCGTAATGGTGCTTGCTTTAATTTGCCATGGTTTAGGATGTGTTCATCTTGCTGTACATTTCCCTAACTGCATTTTCTGTGCAG
Seq C2 exon
TTGAAGGAGCTGCATAAGAAAGGGGCCGACCTGTGTGTGCAGGACCCTGCTGGACGGACCCTATTGCACTATGCTGTGGAAGTGGGCAGCAAGGAGATTGTCAAATACATCATTGATAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014439:ENSDART00000093009:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(18.0=100)
A:
NA
C2:
PF127962=Ank_2=FE(44.9=100),PF127962=Ank_2=PU(1.3=2.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]