HsaINT0048104 @ hg19
Intron Retention
Gene
ENSG00000160305 | DIP2A
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:HGNC Symbol;Acc:17217]
Coordinates
chr21:47976852-47977666:+
Coord C1 exon
chr21:47976852-47976982
Coord A exon
chr21:47976983-47977497
Coord C2 exon
chr21:47977498-47977666
Length
515 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ACGAGCCTTCCCTCTCGCAGTGT
3' ss Score
8.19
Exon sequences
Seq C1 exon
ATGTCGCACGCGGCCACAAGCGCCTTATGCCGCTCCATAAAGCTGCAGTGTGAGCTGTACCCCTCGCGGCAGATCGCCATCTGCCTCGACCCCTACTGTGGCCTTGGTTTTGCCCTGTGGTGTCTGTGCAG
Seq A exon
GTGAGTGCAGGGCCCCTGCTGCCTGCCAGGTGGGAGCAGCTCGTGTGGCTCTTAGGAACCTTGGCCTTCTAAGGCACCTTTTCTGGGTGCTCAGGAAGCCGATGAGATGTGTGTGAGTGGGTTTGTTTGGGGATGAAGTGGGTTGGAGTCTGAGTCTGAAATTGAGTGAAAATACATTTTTCATTAAATACACTGTCCGTTATCAGTACTTGGGAAGAATCTGCTTGATTCCTTCAAACACTAGAAAGTGGCGATCCGTCTCTAGAAGTGAATGCCTCTGGAGTGGTGTCCCCGGATCCTCTCCAAGTGTTCGGAGCAGAGCTCAGAACCCCGTGCCTGCCATCCCCCAACCTTCACCCTGTGGCATGTTTTCCACCAAACCCCCCCACTTGGCGTCAGAACAGAAATCATGCCCCTGTTGTGGCTGGAAAAGAAGTGTTCTTGAGGAAGGGAAGAGTGGAGTGCCCAGGGTGCTGGGTGGGCGGGCGGAGCCTCACGAGCCTTCCCTCTCGCAG
Seq C2 exon
TGTCTACTCGGGACACCAATCAGTGCTGGTGCCCCCGCTGGAGCTGGAGAGCAACGTGTCCCTGTGGCTGTCGGCCGTCAGCCAGTACAAGGCCCGCGTCACCTTCTGCTCCTACTCTGTGATGGAGATGTGCACCAAGGGCCTAGGCGCACAGACGGGTGTCCTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160305-DIP2A:NM_001146116:30
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(11.5=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACAAGCGCCTTATGCCG
R:
CCTGAGGACACCCGTCTGT
Band lengths:
287-802
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)