MmuINT1008615 @ mm10
Intron Retention
Gene
ENSMUSG00000020231 | Dip2a
Description
disco interacting protein 2 homolog A [Source:MGI Symbol;Acc:MGI:2385920]
Coordinates
chr10:76273035-76274279:-
Coord C1 exon
chr10:76274149-76274279
Coord A exon
chr10:76273204-76274148
Coord C2 exon
chr10:76273035-76273203
Length
945 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
AATCGCCTCTCTCCCCACAGCGT
3' ss Score
12.16
Exon sequences
Seq C1 exon
ATGTCGCACGCAGCCACAAGTGCCTTGTGCCGTTCCATAAAGCTTCAGTGTGAGCTGTACCCCTCACGGCAGATCGCCATCTGCCTGGACCCTTACTGTGGCCTCGGGTTTGCACTGTGGTGTCTGTGCAG
Seq A exon
GTGAGTTAGGGTTAGGGTTAGGGTACCTGGGGCCTGGGTGGCTTGTGTGGTTCCTCAGAATTTAAGACTCTTCTATGGCTTTCTGAGTAGCAAGGAGGACTAGAAGTATGGGCGGGGGGGGGGGGTCTGTTTGGGGATTAGGTGGTTAGAATCTGGGTTTTAATTTAATAAAAGAATAAAAATTGCCAGGCATGGTAAGACATGCCTTTAATCACAGCACTTGAGATTCAGAGGACCTCTGAGTTTGAGGCCAGCCAGGCCTATGTACTGAGATGAAACCTTGTTAAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAAAGAGAAAGAAAGAAAGAAAGTAAGAGAGAGAGAGAGGGAGAGAGAAAGAGAGGGAGAGAGAAAGAAAGGATAAGAGGGAGGGAGGGGAGGATGGGAAGGGAGGGAGGGAGGGAGGGGAAGGGAGAGAGAAGGGGACGCAACAAGGTAAAGACATCTACTTTGCTATGGAATCCACATGAAAATAAAAGGACTCTATGAAGTTGTCTCCTGACTGCCACATGCACACACACACACACACACACACACACACTGCACATGCATGTGCACATGTGCACATAATAATAAAAAGGAAAAGAAAAATATTTTCCAATAAATACAAACACTATCCGTTATTAGTGGTTGGGAAGAACCTTGTGGTTCTTTCTAATGCTAAGATGCTTCCTCTGTAATTAAGAGACCTCTTCCATACATAGTCCCCAAGGATGCTCCTGAAGGTGTGGGTGGAGGCCGGCACCCCGCCCACAGTGTCTTTCTGCTAACTCCCAGTGGCCCTCTGAACACCCCGGTGCCTGTTTTGGCCAGAGAAACAGTCTGTGTCAGGAAGGAGCCGGTGTGTGCAGCTTGTGCCCGTGCCCCTTTCCAATCGCCTCTCTCCCCACAG
Seq C2 exon
CGTCTACTCTGGGCACCAGTCAGTGCTCGTTCCCCCACTGGAGCTGGAGAGCAACGTGTCCCTCTGGCTGTCTGCCGTCAGCCAGTACAAGGCCCGAGTTACCTTCTGTTCCTACTCAGTGATGGAAATGTGCACCAAGGGCCTGGGTGCTCAGACAGGCGCCCTTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020231:ENSMUST00000160048:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.1=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGCAGCCACAAGTGCC
R:
CCTAAGGGCGCCTGTCTGAG
Band lengths:
294-1239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types