RnoINT0047718 @ rn6
Intron Retention
Gene
ENSRNOG00000043212 | Dip2a
Description
disco-interacting protein 2 homolog A [Source:RGD Symbol;Acc:1582897]
Coordinates
chr20:13117132-13119161:+
Coord C1 exon
chr20:13117132-13117262
Coord A exon
chr20:13117263-13118992
Coord C2 exon
chr20:13118993-13119161
Length
1730 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
AACTGCCTCTCTCCCCACAGCGT
3' ss Score
11.73
Exon sequences
Seq C1 exon
ATGTCACACGCAGCCACAAGTGCCTTGTGCCGCTCTATAAAGCTTCAGTGTGAGCTGTACCCCTCACGGCAGATTGCCATCTGCCTGGACCCCTACTGTGGCCTTGGCTTCGCCCTGTGGTGTCTGTGCAG
Seq A exon
GTGAGGGTGTGTGCCCATCACTCCCGGGGCCTGGGGGACTTGTGTGGCTCCTCAGAACTTAGGACCCTTCTATGGCTTTCTGAGCAGCTAGGGAGCCTAGAAGCCTCAGTGGGTTTGTCTGGGGAGTAGGTGGTTAGAATCCAGGCTTACAATTTAACAAAAGAGTAAAAGTAGCTGGGCATGGTGAGACGAGCCCTTAATCACAGCATGTGGGATTCAGAGGGAGGTGGACCTCTGGGTTAGATGGCAGCCTGGTTGGTCTACATAGTAAGTTCTAGGTCAGCCAGGCCTATGCAGTGAGCCCTGTCAAAAAAATGAAAACGAAAGGAAGAAAAAAAGGGAGAGAAGGGGAGGGACCAACAAGGCGGTCAGCAAGTAGAGACATTTGCTTTGCTGGCTACCTGAGCTCAGTCCCTGGAATCCACATAAAAGAAAAAGGAAAACAGACTCTATGAAGCTGCTACATGCACACGCACACACACATGCACATACACACACGCACATACACACACATGCATGTACACACATGTACGCACACACATGCACACACAAACGCACATACACACATATGCACATACACACGCACGCACACACACATGCACACAGACACACATGCACACACACATGCACGCATACACACACACGCACATACACGCACACACGCACATACACACAGACATACACACATGCACGCGCACGCACACGCACACACAATAATAAAAAGGAAAAGAATAGAAGTATTTTCCAATACATACAAACACCATCCATTCAAAGTAGTTGGGAAAAATCTTGTGGTTCTTTCAATGCTGAGATGCTTCCTCTGTCATCAGGAAGCTTCCTAGTGTACGGACGGACGTAGTCCCCTACGGCGTTCCTAGTGTACTGACGGGCGTTCCTAGTGTACTGACGGGCGTTCCTAGTGTACGGACAGTGTTCCTGAGTGTTTGGGTGGAGGGCGGCACCACACCCAGTGTCATTTCTGCTGACTCCCACTGGACCGCTGAGCACACCCGTGCCTGTTTGGGCTGGAGAAAGGGTCTATGTGAGGGAGGAGCCTGTGCACACAGGCCTGTGCACTTGTTCCTTTCCAACTGCCTCTCTCCCCACAGCGTGTACTCTGGACACCAGTCGGTACTCGTCCCCCCACTGGAGCTGGAGAGCAATGTGTCTCTCTGGCTGTCCGCCGTCAGCCAGTACAAGGCCCGAGTCACCTTCTGTTCCTACTCAGTGATGGAAATGTGCACCATGCACGCATACACACACACGCACATACACGCACACACGCACATACACACAGACATACACACATGCACGCGCACGCACACGCACACACAATAATAAAAAGGAAAAGAATAGAAGTATTTTCCAATACATACAAACACCATCCATTCAAAGTAGTTGGGAAAAATCTTGTGGTTCTTTCAATGCTGAGATGCTTCCTCTGTCATCAGGAAGCTTCCTAGTGTACGGACGGACGTAGTCCCCTACGGCGTTCCTAGTGTACTGACGGGCGTTCCTAGTGTACTGACGGGCGTTCCTAGTGTACGGACAGTGTTCCTGAGTGTTTGGGTGGAGGGCGGCACCACACCCAGTGTCATTTCTGCTGACTCCCACTGGACCGCTGAGCACACCCGTGCCTGTTTGGGCTGGAGAAAGGGTCTATGTGAGGGAGGAGCCTGTGCACACAGGCCTGTGCACTTGTTCCTTTCCAACTGCCTCTCTCCCCACAG
Seq C2 exon
CGTGTACTCTGGACACCAGTCGGTACTCGTCCCCCCACTGGAGCTGGAGAGCAATGTGTCTCTCTGGCTGTCCGCCGTCAGCCAGTACAAGGCCCGAGTCACCTTCTGTTCCTACTCAGTGATGGAAATGTGCACCAAGGGCCTTGGTGCTCAGACAGGCGCCCTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043212:ENSRNOT00000066017:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.1=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCACACGCAGCCACAAG
R:
CTGAGGGCGCCTGTCTGAG
Band lengths:
299-2029
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]