HsaINT1011088 @ hg38
Intron Retention
Gene
ENSG00000160305 | DIP2A
Description
disco interacting protein 2 homolog A [Source:HGNC Symbol;Acc:HGNC:17217]
Coordinates
chr21:46556939-46557753:+
Coord C1 exon
chr21:46556939-46557069
Coord A exon
chr21:46557070-46557584
Coord C2 exon
chr21:46557585-46557753
Length
515 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ACGAGCCTTCCCTCTCGCAGTGT
3' ss Score
8.19
Exon sequences
Seq C1 exon
ATGTCGCACGCGGCCACAAGCGCCTTATGCCGCTCCATAAAGCTGCAGTGTGAGCTGTACCCCTCGCGGCAGATCGCCATCTGCCTCGACCCCTACTGTGGCCTTGGTTTTGCCCTGTGGTGTCTGTGCAG
Seq A exon
GTGAGTGCAGGGCCCCTGCTGCCTGCCAGGTGGGAGCAGCTCGTGTGGCTCTTAGGAACCTTGGCCTTCTAAGGCACCTTTTCTGGGTGCTCAGGAAGCCGATGAGATGTGTGTGAGTGGGTTTGTTTGGGGATGAAGTGGGTTGGAGTCTGAGTCTGAAATTGAGTGAAAATACATTTTTCATTAAATACACTGTCCGTTATCAGTACTTGGGAAGAATCTGCTTGATTCCTTCAAACACTAGAAAGTGGCGATCCGTCTCTAGAAGTGAATGCCTCTGGAGTGGTGTCCCCGGATCCTCTCCAAGTGTTCGGAGCAGAGCTCAGAACCCCGTGCCTGCCATCCCCCAACCTTCACCCTGTGGCATGTTTTCCACCAAACCCCCCCACTTGGCGTCAGAACAGAAATCATGCCCCTGTTGTGGCTGGAAAAGAAGTGTTCTTGAGGAAGGGAAGAGTGGAGTGCCCAGGGTGCTGGGTGGGCGGGCGGAGCCTCACGAGCCTTCCCTCTCGCAG
Seq C2 exon
TGTCTACTCGGGACACCAATCAGTGCTGGTGCCCCCGCTGGAGCTGGAGAGCAACGTGTCCCTGTGGCTGTCGGCCGTCAGCCAGTACAAGGCCCGCGTCACCTTCTGCTCCTACTCTGTGATGGAGATGTGCACCAAGGGCCTAGGCGCACAGACGGGTGTCCTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160305:ENST00000400274:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.1=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACAAGCGCCTTATGCCG
R:
CCTGAGGACACCCGTCTGT
Band lengths:
287-802
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains