DreINT0057174 @ danRer10
Intron Retention
Gene
ENSDARG00000078058 | dip2a
Description
DIP2 disco-interacting protein 2 homolog A [Source:ZFIN;Acc:ZDB-GENE-091204-2]
Coordinates
chr9:595913-597037:-
Coord C1 exon
chr9:596907-597037
Coord A exon
chr9:596082-596906
Coord C2 exon
chr9:595913-596081
Length
825 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GTGTGTGCGCACGCATGCAGTGT
3' ss Score
3.45
Exon sequences
Seq C1 exon
ATGTCCCACGCTGCCACCAGTGCCTTGTGTCGCTCCATTAAACTGCAGTGTGAGCTGTACCCGTCCCGACAGATCGCCATCTGCCTCGACCCGTACTGCGGCCTGGGCTTCGCTCTCTGGTGTCTCTGCAG
Seq A exon
GTGAGAGAAAACAGTACAACTGTGGAAACATCCCAAATTTAAAATGAATGAATACTTGAGTCATGTATAGTAAAGCATATTCAACTGTATATATATTAAAGTGTTTACACCACTCTGTTAATGAATGCTGCAGCATACTGTAGTGTTAACTGTAGAGAACAGTGTAATAATATTGTAGTGTACTTTAGTTTTTATTACAGTAAACTGTGGTGCATTGTAGTATAATACAACTTATAGTTGTCTAAAACTATAGCTGTGGTAATTTGTAACCATAGCAACTGTAGAATCACTACAACAGATTAATTACTGTAGTTGTTGTGTTACCATAGCAACTGTAGAATCACCACACGTAATTAATTACTATAGTTGTTGTTACCATAGCAACTGTAGAATCACCACAACAGATTAATTACTGCAGTTGTTGTGTTGCCACGGCAACTGTAAAATCACCACAGCAGATTAACTCAAGAGCTTTACTGTAGTGTGATTCAGAAACACTACAGTATTCTCTATACATTAATGTGGGATTTGACATTATTAACCTGATATAAAATTGGAGTTAGTTTTATCAGTTGTAAACTAAATATCATGTACCACAACAAGTGCAGGATAGGTGTCACTTAGGCTTTGGGCTGTATAACATTTACTTGTTAAGAACAAACTGTTGAGGAAAAAAGTTTACAACCACTTGAGTGTGATTAAATGAAATAAGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCACGCATGCAG
Seq C2 exon
TGTGTACTCAGGTCATCAGTCTATCCTGGTTCCTCCGCTGGAGCTGGAGACGAATGCGTCTCTGTGGTTGTCGGCCGTCAGCCAGTATAAAGTGCGCGTGACCTTCTGCTCATACTCAGTGATGGAGATGTGCACTAAAGGCCTGGGCTCTCAGACGGAAGCTCTGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078058:ENSDART00000115030:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.1=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCCCACGCTGCCACC
R:
AGAGCTTCCGTCTGAGAGCC
Band lengths:
296-1121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]